EDI_201400 | 1-O-acylceramide synthase precursor, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0008374      

  • Computed_GO_Functions:  O-acyltransferase activity      

  • Computed_GO_Process_IDs:  GO:0006629      

  • Computed_GO_Processes:  lipid metabolic process      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
EDI_201400SP0.0462290.8888390.064932CS pos: 18-19. ACS-SR. Pr: 0.4189
No Results

  • Fasta :-

    >EDI_201400 MIAPLFIFIWFDFTIACSSRFPIVLVPAFMSSSLHIKSNIPPSVQLPPHCPHQLEGQIWL NLKDGIPLNNTQCFFKYFTPFWNNSNKRFESLDGVQIYYKDFPSIEGISSLGPKEEPIVQ RVLRVWYKMIQQLKRIGYKDKKSLFGLGYDWRYADVNYNNWSKKVKEVIESAYILNNKKV MIVTHSLGGPMTLQLLFQLGNSFCEKYIEKIITISAPFIGTIKALRSFLSGETEGVPVNP LLFRDFERNIDSVYQLMPNYQWWNDTILIFNGTSYPASQMNQILNLINETKNYASFVYTN AMNRYPINWIPKVKLHCLYSSGIETEILLNYSTSFDNQPIQTFGDGDGTVSLNSLSFCKT MNLGESINIGKYDHFGIIKAQKTIDYIIEQSCKTT
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/EDI_201400.fa Sequence name : EDI_201400 Sequence length : 395 VALUES OF COMPUTED PARAMETERS Coef20 : 4.852 CoefTot : -1.584 ChDiff : 5 ZoneTo : 54 KR : 2 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.900 2.018 0.293 0.803 MesoH : 0.151 0.528 -0.251 0.330 MuHd_075 : 14.265 18.501 6.695 4.535 MuHd_095 : 24.593 17.457 8.912 4.910 MuHd_100 : 20.994 20.469 8.942 4.746 MuHd_105 : 18.890 22.790 9.685 4.124 Hmax_075 : 18.550 11.900 2.457 5.060 Hmax_095 : 18.638 5.700 0.739 3.220 Hmax_100 : 17.900 11.700 3.448 4.250 Hmax_105 : 16.300 15.050 4.435 4.818 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7363 0.2637 DFMC : 0.6629 0.3371
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 395 EDI_201400 MIAPLFIFIWFDFTIACSSRFPIVLVPAFMSSSLHIKSNIPPSVQLPPHCPHQLEGQIWLNLKDGIPLNNTQCFFKYFTP 80 FWNNSNKRFESLDGVQIYYKDFPSIEGISSLGPKEEPIVQRVLRVWYKMIQQLKRIGYKDKKSLFGLGYDWRYADVNYNN 160 WSKKVKEVIESAYILNNKKVMIVTHSLGGPMTLQLLFQLGNSFCEKYIEKIITISAPFIGTIKALRSFLSGETEGVPVNP 240 LLFRDFERNIDSVYQLMPNYQWWNDTILIFNGTSYPASQMNQILNLINETKNYASFVYTNAMNRYPINWIPKVKLHCLYS 320 SGIETEILLNYSTSFDNQPIQTFGDGDGTVSLNSLSFCKTMNLGESINIGKYDHFGIIKAQKTIDYIIEQSCKTT 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ........................................................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ EDI_201400 20 TIACSSR|FP 0.112 . EDI_201400 37 SSSLHIK|SN 0.097 . EDI_201400 63 QIWLNLK|DG 0.065 . EDI_201400 76 NTQCFFK|YF 0.074 . EDI_201400 87 FWNNSNK|RF 0.067 . EDI_201400 88 WNNSNKR|FE 0.235 . EDI_201400 100 GVQIYYK|DF 0.073 . EDI_201400 114 ISSLGPK|EE 0.070 . EDI_201400 121 EEPIVQR|VL 0.092 . EDI_201400 124 IVQRVLR|VW 0.341 . EDI_201400 128 VLRVWYK|MI 0.076 . EDI_201400 134 KMIQQLK|RI 0.069 . EDI_201400 135 MIQQLKR|IG 0.153 . EDI_201400 139 LKRIGYK|DK 0.069 . EDI_201400 141 RIGYKDK|KS 0.069 . EDI_201400 142 IGYKDKK|SL 0.148 . EDI_201400 152 GLGYDWR|YA 0.128 . EDI_201400 163 NYNNWSK|KV 0.080 . EDI_201400 164 YNNWSKK|VK 0.165 . EDI_201400 166 NWSKKVK|EV 0.106 . EDI_201400 178 AYILNNK|KV 0.079 . EDI_201400 179 YILNNKK|VM 0.065 . EDI_201400 206 GNSFCEK|YI 0.121 . EDI_201400 210 CEKYIEK|II 0.064 . EDI_201400 223 PFIGTIK|AL 0.061 . EDI_201400 226 GTIKALR|SF 0.126 . EDI_201400 244 VNPLLFR|DF 0.122 . EDI_201400 248 LFRDFER|NI 0.110 . EDI_201400 291 NLINETK|NY 0.062 . EDI_201400 304 YTNAMNR|YP 0.083 . EDI_201400 312 PINWIPK|VK 0.063 . EDI_201400 314 NWIPKVK|LH 0.059 . EDI_201400 359 NSLSFCK|TM 0.061 . EDI_201400 371 ESINIGK|YD 0.066 . EDI_201400 379 DHFGIIK|AQ 0.059 . EDI_201400 382 GIIKAQK|TI 0.083 . EDI_201400 393 IIEQSCK|TT 0.065 . ____________________________^_________________

  • Fasta :-

    >EDI_201400 ATGATTGCACCTCTCTTTATATTCATATGGTTCGATTTTACTATTGCTTGCTCATCTAGA TTTCCTATTGTTCTTGTTCCTGCTTTCATGTCTTCTTCTCTTCATATAAAATCAAATATC CCACCATCAGTTCAATTACCTCCTCATTGTCCTCATCAATTAGAAGGACAAATTTGGTTG AATTTAAAAGATGGGATTCCACTAAACAATACTCAGTGTTTCTTTAAATATTTTACTCCA TTTTGGAATAACTCAAATAAACGTTTTGAATCACTCGATGGAGTTCAAATATATTACAAA GATTTTCCATCTATTGAAGGTATTTCTTCATTAGGACCAAAAGAAGAGCCAATTGTCCAA AGAGTATTACGAGTTTGGTATAAAATGATTCAACAACTTAAAAGAATTGGTTATAAAGAC AAAAAATCGTTGTTTGGACTTGGGTATGATTGGAGATATGCTGATGTTAATTATAATAAT TGGTCAAAAAAAGTGAAAGAAGTCATTGAATCAGCTTATATTCTTAACAATAAAAAAGTT ATGATTGTTACACATAGTTTGGGTGGTCCAATGACTTTGCAATTACTTTTCCAATTGGGT AATTCTTTTTGTGAGAAGTATATTGAAAAAATTATTACTATCTCAGCTCCATTTATTGGA ACAATAAAAGCATTAAGATCTTTTTTATCAGGAGAAACAGAAGGTGTCCCAGTTAATCCA CTATTATTTAGAGACTTTGAAAGAAATATAGATAGTGTTTATCAATTAATGCCAAATTAT CAATGGTGGAATGACACAATTCTTATCTTTAATGGAACATCATATCCAGCTTCTCAAATG AATCAAATACTAAACCTTATAAATGAAACAAAGAACTACGCATCTTTTGTTTATACAAAT GCTATGAACAGATATCCAATAAATTGGATTCCTAAAGTTAAATTACATTGTCTATATTCT TCTGGAATTGAAACAGAAATCCTACTGAACTATTCTACTTCTTTTGATAATCAACCTATT CAAACTTTTGGTGATGGTGATGGAACTGTTTCCTTAAATTCGCTATCGTTTTGTAAAACA ATGAATTTAGGAGAAAGTATTAATATAGGGAAATACGACCATTTTGGTATTATTAAAGCT CAGAAAACTATCGATTATATTATTGAACAAAGTTGTAAAACAACTTAA
  • Download Fasta

  • Fasta :-

    MIAPLFIFIWFDFTIACSSRFPIVLVPAFMSSSLHIKSNIPPSVQLPPHCPHQLEGQIWL NLKDGIPLNNTQCFFKYFTPFWNNSNKRFESLDGVQIYYKDFPSIEGISSLGPKEEPIVQ RVLRVWYKMIQQLKRIGYKDKKSLFGLGYDWRYADVNYNNWSKKVKEVIESAYILNNKKV MIVTHSLGGPMTLQLLFQLGNSFCEKYIEKIITISAPFIGTIKALRSFLSGETEGVPVNP LLFRDFERNIDSVYQLMPNYQWWNDTILIFNGTSYPASQMNQILNLINETKNYASFVYTN AMNRYPINWIPKVKLHCLYSSGIETEILLNYSTSFDNQPIQTFGDGDGTVSLNSLSFCKT MNLGESINIGKYDHFGIIKAQKTIDYIIEQSCKTT

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EDI_201400      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India