EDI_226130 | hypothetical protein, conserved

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_IDPredictionOTHERSPmTPCS_Position
EDI_226130OTHER0.9957890.0002440.003967
No Results

  • Fasta :-

    >EDI_226130 MRRRLIDRRCWTIVYSHGNSQDLGMCLPFIENLAHQLKCNVVGYDYTGYGRNEGESSEIN SVEDLRDVCNYLHNNGVSWERIVLMGHSLGGGVSISFASQECGKWEEVQEIEMNESFESK EEKKEEEIKEQKIGGMIIISTFTSICGVVSKYAGMVINDMFENITKLKHINIPVEVIHGR EDELIGVDESVEIYNSIPEEMRYGYDIINGCRHNDILENEELIKVIKRFLEKL
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/EDI_226130.fa Sequence name : EDI_226130 Sequence length : 233 VALUES OF COMPUTED PARAMETERS Coef20 : 4.789 CoefTot : -0.152 ChDiff : -16 ZoneTo : 21 KR : 5 DE : 1 CleavSite : 11 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.141 1.994 0.514 0.724 MesoH : -0.876 0.329 -0.426 0.237 MuHd_075 : 44.524 22.900 11.554 9.253 MuHd_095 : 30.106 23.405 9.298 7.313 MuHd_100 : 23.592 17.240 6.943 5.414 MuHd_105 : 19.644 14.262 6.661 3.616 Hmax_075 : 15.400 18.200 4.516 5.588 Hmax_095 : -1.700 11.800 0.154 3.440 Hmax_100 : 4.300 8.200 0.347 2.760 Hmax_105 : 7.467 8.200 1.541 2.718 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.2662 0.7338 DFMC : 0.3775 0.6225 This protein is probably imported in mitochondria. f(Ser) = 0.0952 f(Arg) = 0.2381 CMi = 0.23613 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 233 EDI_226130 MRRRLIDRRCWTIVYSHGNSQDLGMCLPFIENLAHQLKCNVVGYDYTGYGRNEGESSEINSVEDLRDVCNYLHNNGVSWE 80 RIVLMGHSLGGGVSISFASQECGKWEEVQEIEMNESFESKEEKKEEEIKEQKIGGMIIISTFTSICGVVSKYAGMVINDM 160 FENITKLKHINIPVEVIHGREDELIGVDESVEIYNSIPEEMRYGYDIINGCRHNDILENEELIKVIKRFLEKL 240 ................................................................................ 80 ................................................................................ 160 ......................................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ EDI_226130 2 -----MR|RR 0.071 . EDI_226130 3 ----MRR|RL 0.129 . EDI_226130 4 ---MRRR|LI 0.146 . EDI_226130 8 RRRLIDR|RC 0.107 . EDI_226130 9 RRLIDRR|CW 0.172 . EDI_226130 38 NLAHQLK|CN 0.068 . EDI_226130 51 DYTGYGR|NE 0.069 . EDI_226130 66 NSVEDLR|DV 0.153 . EDI_226130 81 NGVSWER|IV 0.093 . EDI_226130 104 ASQECGK|WE 0.073 . EDI_226130 120 NESFESK|EE 0.073 . EDI_226130 123 FESKEEK|KE 0.079 . EDI_226130 124 ESKEEKK|EE 0.108 . EDI_226130 129 KKEEEIK|EQ 0.068 . EDI_226130 132 EEIKEQK|IG 0.065 . EDI_226130 151 ICGVVSK|YA 0.115 . EDI_226130 166 MFENITK|LK 0.062 . EDI_226130 168 ENITKLK|HI 0.068 . EDI_226130 180 VEVIHGR|ED 0.099 . EDI_226130 202 SIPEEMR|YG 0.102 . EDI_226130 212 DIINGCR|HN 0.089 . EDI_226130 224 ENEELIK|VI 0.060 . EDI_226130 227 ELIKVIK|RF 0.060 . EDI_226130 228 LIKVIKR|FL 0.279 . EDI_226130 232 IKRFLEK|L- 0.066 . ____________________________^_________________

  • Fasta :-

    >EDI_226130 ATGAGAAGAAGACTAATAGATAGGAGGTGCTGGACAATAGTCTACAGTCATGGAAATTCA CAAGATTTAGGTATGTGTTTACCATTCATAGAAAATCTAGCACATCAACTAAAATGTAAT GTTGTTGGATATGATTACACAGGATATGGTAGAAATGAGGGAGAAAGCAGTGAAATAAAT AGTGTAGAAGATCTTAGGGATGTGTGTAATTATCTGCACAACAACGGAGTATCATGGGAA CGAATAGTGTTAATGGGACACTCTCTTGGAGGAGGAGTGAGTATTTCATTTGCAAGTCAG GAATGTGGGAAATGGGAAGAGGTACAAGAGATTGAAATGAATGAAAGTTTTGAAAGTAAA GAAGAAAAGAAAGAAGAAGAAATAAAGGAACAAAAGATAGGGGGAATGATTATTATCTCA ACATTCACAAGCATTTGTGGAGTAGTAAGTAAATATGCAGGAATGGTAATAAATGATATG TTTGAAAATATAACAAAATTGAAACACATTAATATTCCAGTTGAAGTAATTCATGGGAGA GAGGATGAATTGATAGGAGTTGATGAGTCAGTAGAAATCTACAATTCAATTCCAGAAGAG ATGAGATATGGATATGATATAATCAACGGATGTAGACATAATGACATTCTTGAAAATGAA GAATTAATTAAAGTAATCAAAAGATTTCTTGAAAAACTTTAA
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  • Fasta :-

    MRRRLIDRRCWTIVYSHGNSQDLGMCLPFIENLAHQLKCNVVGYDYTGYGRNEGESSEIN SVEDLRDVCNYLHNNGVSWERIVLMGHSLGGGVSISFASQECGKWEEVQEIEMNESFESK EEKKEEEIKEQKIGGMIIISTFTSICGVVSKYAGMVINDMFENITKLKHINIPVEVIHGR EDELIGVDESVEIYNSIPEEMRYGYDIINGCRHNDILENEELIKVIKRFLEKL

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
EDI_22613061 SSEINSVEDL0.997unspEDI_226130119 SESFESKEEK0.993unsp

EDI_226130      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India