EDI_249350 | proteasome subunit alpha type-1, putative

_IDPredictionOTHERSPmTPCS_Position
EDI_249350OTHER0.9976370.0001110.002252
No Results

  • Fasta :-

    >EDI_249350 MFRNQYDSDNITWSPQGRLFQIEYATEAVKQGSAVVGVKSKTHAVVATFNRQTDELGAYQ KKIFEIDDHIGVAISGFCADARVITSQMRSECIDYSYVYGTPHPVEKLVKQVSDNAQVNT QKYGLRPYGVGLLVIGYDTKPRLFETSPSGLYYSYKAQAIGARSQSCRTYLEKHFELFKE LDEEQLIKQAILALRESLTTTNDKLSVLNCSVAIVGKDTPFRFITDNELQKQLDNLDTQQ MEMVQAEVD
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/EDI_249350.fa Sequence name : EDI_249350 Sequence length : 249 VALUES OF COMPUTED PARAMETERS Coef20 : 3.745 CoefTot : -0.311 ChDiff : -5 ZoneTo : 6 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.465 1.265 0.137 0.498 MesoH : -1.037 0.043 -0.446 0.119 MuHd_075 : 26.819 14.876 6.227 6.389 MuHd_095 : 23.206 3.210 2.510 4.147 MuHd_100 : 22.800 5.656 3.139 4.062 MuHd_105 : 15.127 7.484 3.280 2.091 Hmax_075 : -1.400 -0.175 -2.530 1.907 Hmax_095 : -0.800 -3.700 -3.348 0.753 Hmax_100 : -0.800 -3.700 -3.348 0.300 Hmax_105 : -4.600 -5.400 -4.207 0.548 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9028 0.0972 DFMC : 0.9257 0.0743
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 249 EDI_249350 MFRNQYDSDNITWSPQGRLFQIEYATEAVKQGSAVVGVKSKTHAVVATFNRQTDELGAYQKKIFEIDDHIGVAISGFCAD 80 ARVITSQMRSECIDYSYVYGTPHPVEKLVKQVSDNAQVNTQKYGLRPYGVGLLVIGYDTKPRLFETSPSGLYYSYKAQAI 160 GARSQSCRTYLEKHFELFKELDEEQLIKQAILALRESLTTTNDKLSVLNCSVAIVGKDTPFRFITDNELQKQLDNLDTQQ 240 MEMVQAEVD 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ......... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ EDI_249350 3 ----MFR|NQ 0.088 . EDI_249350 18 TWSPQGR|LF 0.126 . EDI_249350 30 YATEAVK|QG 0.064 . EDI_249350 39 SAVVGVK|SK 0.081 . EDI_249350 41 VVGVKSK|TH 0.059 . EDI_249350 51 VVATFNR|QT 0.107 . EDI_249350 61 ELGAYQK|KI 0.074 . EDI_249350 62 LGAYQKK|IF 0.109 . EDI_249350 82 GFCADAR|VI 0.107 . EDI_249350 89 VITSQMR|SE 0.092 . EDI_249350 107 TPHPVEK|LV 0.102 . EDI_249350 110 PVEKLVK|QV 0.084 . EDI_249350 122 AQVNTQK|YG 0.058 . EDI_249350 126 TQKYGLR|PY 0.119 . EDI_249350 140 VIGYDTK|PR 0.054 . EDI_249350 142 GYDTKPR|LF 0.099 . EDI_249350 156 GLYYSYK|AQ 0.077 . EDI_249350 163 AQAIGAR|SQ 0.120 . EDI_249350 168 ARSQSCR|TY 0.137 . EDI_249350 173 CRTYLEK|HF 0.062 . EDI_249350 179 KHFELFK|EL 0.064 . EDI_249350 188 DEEQLIK|QA 0.070 . EDI_249350 195 QAILALR|ES 0.074 . EDI_249350 204 LTTTNDK|LS 0.051 . EDI_249350 217 SVAIVGK|DT 0.071 . EDI_249350 222 GKDTPFR|FI 0.154 . EDI_249350 231 TDNELQK|QL 0.073 . ____________________________^_________________

  • Fasta :-

    >EDI_249350 ATGTTCCGCAATCAATATGATTCTGATAATATTACATGGAGTCCTCAAGGAAGGTTATTC CAAATTGAATATGCAACAGAAGCTGTTAAACAAGGATCAGCTGTTGTTGGCGTCAAATCA AAAACACATGCTGTTGTTGCAACATTTAATAGACAAACTGATGAATTAGGTGCATACCAA AAGAAAATATTTGAAATTGATGACCATATTGGAGTTGCAATTAGTGGATTTTGTGCTGAT GCACGAGTGATTACAAGTCAAATGAGAAGTGAGTGTATTGATTATTCGTATGTATATGGA ACACCACATCCAGTAGAAAAACTTGTTAAACAAGTTTCTGATAATGCACAAGTTAATACT CAAAAGTATGGATTAAGACCATATGGAGTTGGGTTATTAGTTATCGGATACGATACTAAA CCTCGATTATTTGAAACATCACCAAGTGGACTTTATTATAGTTATAAGGCACAAGCTATT GGAGCACGATCACAGTCATGCAGAACATATCTTGAAAAACATTTTGAATTATTTAAAGAA TTAGATGAAGAACAACTAATCAAACAAGCCATTTTAGCTTTAAGAGAATCATTAACAACT ACTAATGATAAACTTTCTGTTTTAAATTGTAGTGTAGCAATTGTTGGAAAAGATACTCCA TTTAGATTTATTACAGATAACGAACTTCAAAAGCAATTAGATAATTTAGATACTCAACAA ATGGAAATGGTACAAGCTGAAGTTGATTAA
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  • Fasta :-

    MFRNQYDSDNITWSPQGRLFQIEYATEAVKQGSAVVGVKSKTHAVVATFNRQTDELGAYQ KKIFEIDDHIGVAISGFCADARVITSQMRSECIDYSYVYGTPHPVEKLVKQVSDNAQVNT QKYGLRPYGVGLLVIGYDTKPRLFETSPSGLYYSYKAQAIGARSQSCRTYLEKHFELFKE LDEEQLIKQAILALRESLTTTNDKLSVLNCSVAIVGKDTPFRFITDNELQKQLDNLDTQQ MEMVQAEVD

  • title: active site
  • coordinates: S33,F49,R51,K62,A162
No Results
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EDI_249350      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India