EDI_277850 | proteasome subunit beta type, putative

_IDPredictionOTHERSPmTPCS_Position
EDI_277850OTHER0.9989180.0009740.000108
No Results

  • Fasta :-

    >EDI_277850 MDSCIGIVGKDFVLMAVDGNSGRGVITVRNDFNKIYPVQGNRLLTIIGEGNDRQVLADFV QRNIALNYYRNGLKSTTQSIAHWIRRQVSDSLREGGYQCSMLLGGVDEKPELFMIDQFGT LVPETYASHGIGSNFVYALLDKNWHSGMEFEEALELMKKCIKEIQKRVIVSSSHYCIEVC YKDKTELIQGPEVFPPVN
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/EDI_277850.fa Sequence name : EDI_277850 Sequence length : 198 VALUES OF COMPUTED PARAMETERS Coef20 : 3.516 CoefTot : 0.000 ChDiff : -3 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.371 1.400 0.007 0.475 MesoH : -0.871 0.065 -0.481 0.175 MuHd_075 : 8.738 9.659 4.862 2.252 MuHd_095 : 32.417 18.317 8.759 5.589 MuHd_100 : 20.027 10.106 4.696 3.775 MuHd_105 : 5.714 4.604 0.130 1.508 Hmax_075 : 6.000 15.600 2.308 4.820 Hmax_095 : 19.800 20.300 4.558 6.685 Hmax_100 : 19.800 19.600 4.464 6.080 Hmax_105 : 8.000 14.000 1.174 4.560 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9801 0.0199 DFMC : 0.9908 0.0092
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 198 EDI_277850 MDSCIGIVGKDFVLMAVDGNSGRGVITVRNDFNKIYPVQGNRLLTIIGEGNDRQVLADFVQRNIALNYYRNGLKSTTQSI 80 AHWIRRQVSDSLREGGYQCSMLLGGVDEKPELFMIDQFGTLVPETYASHGIGSNFVYALLDKNWHSGMEFEEALELMKKC 160 IKEIQKRVIVSSSHYCIEVCYKDKTELIQGPEVFPPVN 240 ................................................................................ 80 ................................................................................ 160 ...................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ EDI_277850 10 CIGIVGK|DF 0.065 . EDI_277850 23 VDGNSGR|GV 0.192 . EDI_277850 29 RGVITVR|ND 0.078 . EDI_277850 34 VRNDFNK|IY 0.081 . EDI_277850 42 YPVQGNR|LL 0.082 . EDI_277850 53 IGEGNDR|QV 0.097 . EDI_277850 62 LADFVQR|NI 0.071 . EDI_277850 70 IALNYYR|NG 0.079 . EDI_277850 74 YYRNGLK|ST 0.084 . EDI_277850 85 SIAHWIR|RQ 0.069 . EDI_277850 86 IAHWIRR|QV 0.461 . EDI_277850 93 QVSDSLR|EG 0.110 . EDI_277850 109 LGGVDEK|PE 0.058 . EDI_277850 142 VYALLDK|NW 0.062 . EDI_277850 158 EALELMK|KC 0.056 . EDI_277850 159 ALELMKK|CI 0.118 . EDI_277850 162 LMKKCIK|EI 0.061 . EDI_277850 166 CIKEIQK|RV 0.066 . EDI_277850 167 IKEIQKR|VI 0.151 . EDI_277850 182 CIEVCYK|DK 0.069 . EDI_277850 184 EVCYKDK|TE 0.061 . ____________________________^_________________

  • Fasta :-

    >EDI_277850 ATGGATAGTTGTATAGGTATTGTTGGTAAAGATTTTGTATTAATGGCAGTTGACGGAAAT AGTGGAAGAGGGGTCATTACAGTTCGGAATGATTTTAATAAAATATATCCTGTTCAAGGA AATCGATTATTAACAATTATTGGAGAAGGTAATGATCGTCAAGTATTAGCTGATTTTGTT CAAAGAAATATTGCTCTTAATTATTATCGAAATGGATTAAAAAGTACTACACAATCAATT GCCCATTGGATTAGAAGACAAGTATCTGATTCATTACGTGAAGGTGGATATCAGTGTAGT ATGCTTCTTGGTGGTGTTGATGAGAAACCAGAATTATTTATGATAGATCAATTTGGAACT TTAGTTCCTGAAACATATGCCTCACATGGAATTGGAAGTAATTTTGTGTATGCACTCTTA GATAAAAATTGGCACTCTGGCATGGAATTTGAAGAGGCTCTTGAATTAATGAAAAAATGT ATTAAAGAAATTCAAAAGAGAGTAATTGTCTCTTCTTCTCATTATTGCATTGAGGTTTGT TACAAGGACAAAACTGAATTAATTCAAGGCCCAGAAGTATTTCCACCAGTAAATTAA
  • Download Fasta

  • Fasta :-

    MDSCIGIVGKDFVLMAVDGNSGRGVITVRNDFNKIYPVQGNRLLTIIGEGNDRQVLADFV QRNIALNYYRNGLKSTTQSIAHWIRRQVSDSLREGGYQCSMLLGGVDEKPELFMIDQFGT LVPETYASHGIGSNFVYALLDKNWHSGMEFEEALELMKKCIKEIQKRVIVSSSHYCIEVC YKDKTELIQGPEVFPPVN

    No Results
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No Results
IDSitePeptideScoreMethod
EDI_27785091 SQVSDSLREG0.997unsp

EDI_277850      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India