EDI_281600 | hypothetical protein, conserved

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_IDPredictionOTHERSPmTPCS_Position
EDI_281600OTHER0.9677700.0021690.030061
No Results

  • Fasta :-

    >EDI_281600 MSMLRCIGYNIGSYFYNSVSSKRLIKLQPFTQKNIVYILGNCYYPETNENLNHLTFNDAN IKIHDLIVATYRQKYSCLGNTYLSSDAGWGCAIRATQMMIVNTLVIFKDQMQQIIDYNSF EHQQNKLQAKELIYDKISSLLSIHNIYIQEIIKVHNPTGTNFLPPSICCIAISSLLQEWD KKLFNCITCLDHIPNCSYPTLYLIPQIITFTEHQLILDSLTLSQSRGFVGGIGESAIFVF GYQGTTLFFLDPHYVQNAGDFGYFNPPTYQIDLSLISPSIVFAFMCYNENDCEQLRNIFN MGKVPVTPREFTSTKEVDGVEILDF
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/EDI_281600.fa Sequence name : EDI_281600 Sequence length : 325 VALUES OF COMPUTED PARAMETERS Coef20 : 4.104 CoefTot : -2.065 ChDiff : -7 ZoneTo : 45 KR : 5 DE : 0 CleavSite : 15 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.459 1.665 0.339 0.611 MesoH : 0.302 0.600 -0.132 0.373 MuHd_075 : 34.937 22.513 10.274 8.484 MuHd_095 : 30.519 27.202 8.938 8.822 MuHd_100 : 33.734 21.676 10.121 7.181 MuHd_105 : 31.664 18.115 8.763 6.448 Hmax_075 : 14.700 15.050 2.534 5.530 Hmax_095 : 18.113 18.288 2.931 6.825 Hmax_100 : 11.700 16.200 1.914 5.200 Hmax_105 : 8.100 11.550 0.187 5.133 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1607 0.8393 DFMC : 0.3120 0.6880 This protein is probably imported in mitochondria. f(Ser) = 0.1111 f(Arg) = 0.0444 CMi = 0.84034 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 325 EDI_281600 MSMLRCIGYNIGSYFYNSVSSKRLIKLQPFTQKNIVYILGNCYYPETNENLNHLTFNDANIKIHDLIVATYRQKYSCLGN 80 TYLSSDAGWGCAIRATQMMIVNTLVIFKDQMQQIIDYNSFEHQQNKLQAKELIYDKISSLLSIHNIYIQEIIKVHNPTGT 160 NFLPPSICCIAISSLLQEWDKKLFNCITCLDHIPNCSYPTLYLIPQIITFTEHQLILDSLTLSQSRGFVGGIGESAIFVF 240 GYQGTTLFFLDPHYVQNAGDFGYFNPPTYQIDLSLISPSIVFAFMCYNENDCEQLRNIFNMGKVPVTPREFTSTKEVDGV 320 EILDF 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ..... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ EDI_281600 5 --MSMLR|CI 0.106 . EDI_281600 22 YNSVSSK|RL 0.078 . EDI_281600 23 NSVSSKR|LI 0.187 . EDI_281600 26 SSKRLIK|LQ 0.099 . EDI_281600 33 LQPFTQK|NI 0.068 . EDI_281600 62 FNDANIK|IH 0.058 . EDI_281600 72 LIVATYR|QK 0.090 . EDI_281600 74 VATYRQK|YS 0.062 . EDI_281600 94 GWGCAIR|AT 0.091 . EDI_281600 108 NTLVIFK|DQ 0.070 . EDI_281600 126 FEHQQNK|LQ 0.063 . EDI_281600 130 QNKLQAK|EL 0.070 . EDI_281600 136 KELIYDK|IS 0.053 . EDI_281600 153 YIQEIIK|VH 0.058 . EDI_281600 181 LLQEWDK|KL 0.067 . EDI_281600 182 LQEWDKK|LF 0.079 . EDI_281600 226 LTLSQSR|GF 0.087 . EDI_281600 296 NDCEQLR|NI 0.092 . EDI_281600 303 NIFNMGK|VP 0.054 . EDI_281600 309 KVPVTPR|EF 0.077 . EDI_281600 315 REFTSTK|EV 0.098 . ____________________________^_________________

  • Fasta :-

    >EDI_281600 ATGTCAATGTTGAGATGTATTGGATATAATATTGGATCATATTTTTATAATAGTGTTTCC TCTAAAAGATTAATTAAATTACAACCATTTACACAAAAAAATATTGTTTATATTCTTGGA AATTGTTATTATCCTGAAACTAATGAAAACTTAAATCATTTAACTTTCAATGATGCAAAT ATTAAAATTCATGATTTAATTGTAGCAACATACAGACAAAAATATTCATGTTTAGGAAAT ACTTATCTTTCTTCTGATGCAGGATGGGGATGTGCTATTCGAGCAACACAAATGATGATA GTAAATACATTGGTCATTTTTAAAGATCAAATGCAACAAATAATTGATTATAATTCATTT GAACATCAACAAAATAAATTACAAGCAAAAGAACTTATTTATGATAAAATTTCATCATTA TTATCAATTCATAATATTTATATTCAAGAAATCATTAAAGTACATAATCCAACTGGAACT AATTTTTTACCACCATCAATATGTTGTATTGCTATTTCATCACTTTTACAAGAATGGGAT AAAAAACTATTTAATTGTATCACTTGTTTAGATCATATCCCAAATTGTTCATATCCAACA CTTTATTTAATTCCTCAAATTATCACATTCACTGAACATCAATTAATTTTAGATTCATTA ACTCTTTCTCAAAGTCGAGGATTTGTTGGTGGTATTGGAGAATCTGCAATTTTTGTTTTT GGATATCAAGGAACAACATTATTTTTTTTAGACCCTCATTATGTACAAAATGCAGGAGAT TTTGGGTATTTTAATCCACCAACATATCAAATTGACCTTTCATTAATTAGTCCATCTATT GTTTTTGCTTTTATGTGTTATAATGAAAATGATTGTGAACAACTTCGAAATATCTTTAAT ATGGGAAAAGTACCTGTCACCCCAAGAGAATTTACATCAACAAAAGAAGTTGATGGTGTT GAAATCTTAGACTTTTAA
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  • Fasta :-

    MSMLRCIGYNIGSYFYNSVSSKRLIKLQPFTQKNIVYILGNCYYPETNENLNHLTFNDAN IKIHDLIVATYRQKYSCLGNTYLSSDAGWGCAIRATQMMIVNTLVIFKDQMQQIIDYNSF EHQQNKLQAKELIYDKISSLLSIHNIYIQEIIKVHNPTGTNFLPPSICCIAISSLLQEWD KKLFNCITCLDHIPNCSYPTLYLIPQIITFTEHQLILDSLTLSQSRGFVGGIGESAIFVF GYQGTTLFFLDPHYVQNAGDFGYFNPPTYQIDLSLISPSIVFAFMCYNENDCEQLRNIFN MGKVPVTPREFTSTKEVDGVEILDF

    No Results
No Results
No Results
IDSitePeptideScoreMethod
EDI_281600313 SREFTSTKEV0.994unsp

EDI_281600      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India