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  • Fasta :-

    >EDI_290730 MSISNRPYEFKCVNEKICSTDPVYRYFMKSLLPSQKQPNGRYFDICMIRVNSLDNSHIDL CYHALPTQVIALYYTPIDSQLQKLKPNEDYCGYYFFPYDIVEQHQSYFGGFNCIYYDIDW DDSSYLKNMVDGFDYQYVNKSTGKQNFDEVHFVASAPFINQRY
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/EDI_290730.fa Sequence name : EDI_290730 Sequence length : 163 VALUES OF COMPUTED PARAMETERS Coef20 : 3.973 CoefTot : -0.185 ChDiff : -5 ZoneTo : 8 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.729 0.841 0.001 0.437 MesoH : -0.966 -0.121 -0.463 0.160 MuHd_075 : 33.957 22.454 12.900 7.415 MuHd_095 : 4.333 8.556 2.034 1.534 MuHd_100 : 13.306 12.695 4.154 3.379 MuHd_105 : 20.991 14.883 4.547 4.751 Hmax_075 : 12.700 16.100 5.770 4.860 Hmax_095 : -1.750 8.488 0.035 1.689 Hmax_100 : -1.900 7.200 -1.013 2.130 Hmax_105 : 8.750 12.717 0.759 5.180 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9159 0.0841 DFMC : 0.9102 0.0898
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 163 EDI_290730 MSISNRPYEFKCVNEKICSTDPVYRYFMKSLLPSQKQPNGRYFDICMIRVNSLDNSHIDLCYHALPTQVIALYYTPIDSQ 80 LQKLKPNEDYCGYYFFPYDIVEQHQSYFGGFNCIYYDIDWDDSSYLKNMVDGFDYQYVNKSTGKQNFDEVHFVASAPFIN 160 QRY 240 ................................................................................ 80 ................................................................................ 160 ... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ EDI_290730 6 -MSISNR|PY 0.107 . EDI_290730 11 NRPYEFK|CV 0.095 . EDI_290730 16 FKCVNEK|IC 0.062 . EDI_290730 25 STDPVYR|YF 0.112 . EDI_290730 29 VYRYFMK|SL 0.099 . EDI_290730 36 SLLPSQK|QP 0.061 . EDI_290730 41 QKQPNGR|YF 0.123 . EDI_290730 49 FDICMIR|VN 0.076 . EDI_290730 83 IDSQLQK|LK 0.062 . EDI_290730 85 SQLQKLK|PN 0.071 . EDI_290730 127 DDSSYLK|NM 0.063 . EDI_290730 140 DYQYVNK|ST 0.120 . EDI_290730 144 VNKSTGK|QN 0.074 . EDI_290730 162 APFINQR|Y- 0.106 . ____________________________^_________________
  • Fasta :-

    >EDI_290730 ATGTCAATTAGTAATAGACCATATGAATTTAAATGTGTTAATGAAAAGATTTGTTCAACT GATCCAGTTTATAGATATTTCATGAAATCATTACTTCCATCTCAAAAACAACCAAATGGA AGATATTTTGATATTTGTATGATTCGAGTTAATTCTCTTGATAATTCACATATTGATTTA TGTTATCATGCTCTTCCAACTCAAGTTATTGCATTATATTATACTCCAATTGATTCACAA TTACAAAAATTAAAACCAAATGAAGATTATTGTGGATATTATTTCTTCCCTTATGATATC GTTGAACAACATCAATCCTATTTTGGTGGGTTTAATTGCATTTATTATGATATTGATTGG GATGATTCTAGTTATCTTAAAAATATGGTTGATGGTTTTGATTATCAATACGTTAATAAA TCAACTGGAAAACAAAACTTTGATGAAGTACATTTTGTTGCCTCAGCACCATTTATTAAT CAACGCTATTAA
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  • Fasta :-

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EDI_290730      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India