EDI_294750 | 26S protease regulatory subunit, putative

_IDPredictionOTHERSPmTPCS_Position
EDI_294750OTHER0.9972270.0000100.002764
No Results

  • Fasta :-

    >EDI_294750 MSMTLGKKRLREYGNNNKLPQINPRTQCNLKKLRLERLKDILLIQRDFIENQEQIKPKEE LEKDSRQKVEELRGSPLEVSKLHEMIDDHHAIISSGNTMQYYVPVLSIVDRELLEPGVQV LTHNHNKAIVGVLQNDEDPHVSVMKVDKAPLESYADVGGLEKQIQEIKEAVELPLSHPEL YEEIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRIVGSELIQKYLGDGPKLVREL FQAAKDSAPSIVFIDEIDAVGTKRYDAHSGGEKEIQRTMLELLNQLDGFDTRGEVKVIIA TNRIESLDSALIRPGRIDRKIEFPLPDIKTKRKIFEIHTSKMTLEEGVDMEEFVMSKDDL SGADIKAICTEAGLLALRERRMKVNQEDFKKAKEKVMYRKKEGVPDGLYL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/EDI_294750.fa Sequence name : EDI_294750 Sequence length : 410 VALUES OF COMPUTED PARAMETERS Coef20 : 3.575 CoefTot : -1.557 ChDiff : -5 ZoneTo : 35 KR : 9 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.835 0.994 -0.011 0.414 MesoH : -0.793 0.253 -0.418 0.199 MuHd_075 : 31.663 21.804 10.128 6.524 MuHd_095 : 24.002 19.341 6.334 5.781 MuHd_100 : 28.701 20.516 6.795 6.938 MuHd_105 : 32.737 21.102 8.055 7.664 Hmax_075 : 5.400 5.500 -0.250 3.600 Hmax_095 : -0.900 7.800 -3.216 2.370 Hmax_100 : 3.100 8.200 -1.219 3.090 Hmax_105 : 5.367 8.200 -0.762 3.090 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.4950 0.5050 DFMC : 0.4901 0.5099 This protein is probably imported in mitochondria. f(Ser) = 0.0286 f(Arg) = 0.1143 CMi = 0.12422 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 410 EDI_294750 MSMTLGKKRLREYGNNNKLPQINPRTQCNLKKLRLERLKDILLIQRDFIENQEQIKPKEELEKDSRQKVEELRGSPLEVS 80 KLHEMIDDHHAIISSGNTMQYYVPVLSIVDRELLEPGVQVLTHNHNKAIVGVLQNDEDPHVSVMKVDKAPLESYADVGGL 160 EKQIQEIKEAVELPLSHPELYEEIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRIVGSELIQKYLGDGPKLVREL 240 FQAAKDSAPSIVFIDEIDAVGTKRYDAHSGGEKEIQRTMLELLNQLDGFDTRGEVKVIIATNRIESLDSALIRPGRIDRK 320 IEFPLPDIKTKRKIFEIHTSKMTLEEGVDMEEFVMSKDDLSGADIKAICTEAGLLALRERRMKVNQEDFKKAKEKVMYRK 400 KEGVPDGLYL 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 .......... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ EDI_294750 7 MSMTLGK|KR 0.058 . EDI_294750 8 SMTLGKK|RL 0.080 . EDI_294750 9 MTLGKKR|LR 0.163 . EDI_294750 11 LGKKRLR|EY 0.092 . EDI_294750 18 EYGNNNK|LP 0.056 . EDI_294750 25 LPQINPR|TQ 0.092 . EDI_294750 31 RTQCNLK|KL 0.058 . EDI_294750 32 TQCNLKK|LR 0.099 . EDI_294750 34 CNLKKLR|LE 0.069 . EDI_294750 37 KKLRLER|LK 0.214 . EDI_294750 39 LRLERLK|DI 0.077 . EDI_294750 46 DILLIQR|DF 0.086 . EDI_294750 56 ENQEQIK|PK 0.071 . EDI_294750 58 QEQIKPK|EE 0.066 . EDI_294750 63 PKEELEK|DS 0.082 . EDI_294750 66 ELEKDSR|QK 0.084 . EDI_294750 68 EKDSRQK|VE 0.057 . EDI_294750 73 QKVEELR|GS 0.077 . EDI_294750 81 SPLEVSK|LH 0.068 . EDI_294750 111 VLSIVDR|EL 0.103 . EDI_294750 127 LTHNHNK|AI 0.080 . EDI_294750 145 PHVSVMK|VD 0.063 . EDI_294750 148 SVMKVDK|AP 0.064 . EDI_294750 162 DVGGLEK|QI 0.061 . EDI_294750 168 KQIQEIK|EA 0.060 . EDI_294750 187 YEEIGIK|PP 0.059 . EDI_294750 190 IGIKPPK|GV 0.091 . EDI_294750 202 GPPGTGK|TL 0.061 . EDI_294750 207 GKTLLAK|AV 0.077 . EDI_294750 219 TSATFLR|IV 0.216 . EDI_294750 228 GSELIQK|YL 0.086 . EDI_294750 235 YLGDGPK|LV 0.073 . EDI_294750 238 DGPKLVR|EL 0.083 . EDI_294750 245 ELFQAAK|DS 0.072 . EDI_294750 263 IDAVGTK|RY 0.063 . EDI_294750 264 DAVGTKR|YD 0.173 . EDI_294750 273 AHSGGEK|EI 0.064 . EDI_294750 277 GEKEIQR|TM 0.080 . EDI_294750 292 LDGFDTR|GE 0.094 . EDI_294750 296 DTRGEVK|VI 0.063 . EDI_294750 303 VIIATNR|IE 0.070 . EDI_294750 313 LDSALIR|PG 0.099 . EDI_294750 316 ALIRPGR|ID 0.286 . EDI_294750 319 RPGRIDR|KI 0.311 . EDI_294750 320 PGRIDRK|IE 0.075 . EDI_294750 329 FPLPDIK|TK 0.060 . EDI_294750 331 LPDIKTK|RK 0.073 . EDI_294750 332 PDIKTKR|KI 0.249 . EDI_294750 333 DIKTKRK|IF 0.092 . EDI_294750 341 FEIHTSK|MT 0.065 . EDI_294750 357 EEFVMSK|DD 0.061 . EDI_294750 366 LSGADIK|AI 0.071 . EDI_294750 378 AGLLALR|ER 0.068 . EDI_294750 380 LLALRER|RM 0.083 . EDI_294750 381 LALRERR|MK 0.431 . EDI_294750 383 LRERRMK|VN 0.112 . EDI_294750 390 VNQEDFK|KA 0.068 . EDI_294750 391 NQEDFKK|AK 0.117 . EDI_294750 393 EDFKKAK|EK 0.067 . EDI_294750 395 FKKAKEK|VM 0.070 . EDI_294750 399 KEKVMYR|KK 0.110 . EDI_294750 400 EKVMYRK|KE 0.081 . EDI_294750 401 KVMYRKK|EG 0.082 . ____________________________^_________________

  • Fasta :-

    >EDI_294750 ATGAGTATGACTCTTGGAAAAAAAAGATTAAGAGAATATGGTAATAATAATAAATTACCA CAAATTAATCCTAGAACACAGTGCAATCTTAAAAAATTAAGATTAGAACGATTAAAAGAT ATCTTATTAATTCAAAGAGATTTTATTGAAAACCAAGAACAAATAAAACCAAAAGAAGAA TTAGAAAAGGATTCAAGACAAAAAGTTGAAGAACTTAGAGGAAGTCCATTAGAAGTTAGT AAATTACATGAAATGATTGATGACCATCATGCTATTATTTCTAGTGGAAATACAATGCAA TATTATGTTCCAGTTCTTTCTATAGTAGATAGAGAATTATTAGAACCAGGAGTACAAGTT CTTACTCATAACCATAATAAAGCTATTGTTGGAGTATTACAAAATGATGAGGACCCTCAT GTTTCTGTAATGAAAGTAGACAAAGCACCATTAGAAAGTTATGCAGATGTTGGTGGTTTA GAAAAACAAATTCAAGAAATTAAGGAAGCTGTTGAACTTCCATTAAGTCATCCAGAGTTA TATGAAGAAATTGGCATTAAACCACCAAAAGGAGTAATTCTTTATGGACCTCCAGGAACA GGAAAAACTTTATTGGCTAAAGCTGTTGCAAATGAAACATCAGCAACATTTTTACGTATT GTTGGATCTGAATTAATTCAAAAATATCTTGGAGATGGACCTAAATTAGTAAGAGAATTG TTCCAAGCAGCCAAAGACAGTGCCCCTTCTATTGTTTTTATTGATGAAATTGATGCTGTT GGTACTAAACGTTATGACGCACATTCAGGAGGAGAAAAAGAAATTCAAAGAACAATGTTA GAACTCTTAAATCAACTTGATGGATTTGATACTCGAGGAGAAGTAAAAGTTATTATTGCT ACAAATAGAATTGAGTCATTAGATTCAGCACTTATCAGACCAGGAAGAATTGATAGAAAG ATTGAATTCCCATTACCAGATATCAAAACCAAAAGAAAAATTTTTGAGATTCATACATCT AAAATGACATTAGAAGAAGGTGTTGATATGGAAGAATTTGTTATGTCAAAGGATGATTTA TCTGGAGCTGATATCAAAGCTATTTGTACTGAAGCAGGTTTATTAGCACTAAGAGAAAGA AGAATGAAAGTTAATCAAGAAGACTTTAAGAAAGCAAAAGAAAAGGTCATGTATAGAAAG AAAGAAGGAGTTCCAGATGGATTATATCTTTAA
  • Download Fasta

  • Fasta :-

    MSMTLGKKRLREYGNNNKLPQINPRTQCNLKKLRLERLKDILLIQRDFIENQEQIKPKEE LEKDSRQKVEELRGSPLEVSKLHEMIDDHHAIISSGNTMQYYVPVLSIVDRELLEPGVQV LTHNHNKAIVGVLQNDEDPHVSVMKVDKAPLESYADVGGLEKQIQEIKEAVELPLSHPEL YEEIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRIVGSELIQKYLGDGPKLVREL FQAAKDSAPSIVFIDEIDAVGTKRYDAHSGGEKEIQRTMLELLNQLDGFDTRGEVKVIIA TNRIESLDSALIRPGRIDRKIEFPLPDIKTKRKIFEIHTSKMTLEEGVDMEEFVMSKDDL SGADIKAICTEAGLLALRERRMKVNQEDFKKAKEKVMYRKKEGVPDGLYL

  • title: ATP binding site
  • coordinates: P197,P198,G199,T200,G201,K202,T203,L204,D255,N302
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
EDI_294750361 SKDDLSGADI0.995unspEDI_294750361 SKDDLSGADI0.995unspEDI_294750361 SKDDLSGADI0.995unspEDI_29475075 SELRGSPLEV0.991unspEDI_294750269 SYDAHSGGEK0.997unsp

EDI_294750      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India