EDI_300750 | proteasome subunit alpha type-3, putative

UniProt_ID: B0E727

Computed_GO_Component_IDs: GO:0005839 GO:0019773
Computed_GO_Components: proteasome core complex proteasome core complex, alpha-subunit complex
Computed_GO_Function_IDs: GO:0004175 GO:0004298
Computed_GO_Functions: endopeptidase activity threonine-type endopeptidase activity
Computed_GO_Process_IDs: GO:0051603 GO:0006511
Computed_GO_Processes: proteolysis involved in cellular protein catabolic process ubiquitin-dependent protein catabolic process
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	EDI_300750	OTHER	0.999945	0.000053	0.000002

No Results

Fasta :-
>EDI_300750 MSSIGSGYDDSCTTFSPDGKVFQIDYAMKAVENSATALSIKCVDGVVFGVEKLIISKMID KSSNKRIFNVGTHIGITCAGFLPDARKLAKKAQEEAESFKENYGMNIPVKVLAEKIAMYM QNYTLYGSLRPFGCSLLIGGVDQHGYSLHYIEPSGTTYGYFANGIGKGKQICKNELEKIN FSQITCEEALIKLVEIIDLCHSEWKDKPYEIELSWISEKTNNIVKKVDKEMKQKIIDQAR NKQMHQN
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/EDI_300750.fa Sequence name : EDI_300750 Sequence length : 247 VALUES OF COMPUTED PARAMETERS Coef20 : 3.240 CoefTot : -0.321 ChDiff : 1 ZoneTo : 8 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.359 1.382 0.190 0.588 MesoH : -0.421 0.379 -0.342 0.218 MuHd_075 : 19.182 4.416 4.630 0.946 MuHd_095 : 21.989 17.134 7.107 4.791 MuHd_100 : 16.779 15.367 5.349 4.570 MuHd_105 : 9.573 10.600 2.996 3.785 Hmax_075 : 7.525 -0.700 1.039 1.435 Hmax_095 : 13.100 9.200 2.995 4.090 Hmax_100 : 13.100 9.200 2.995 4.090 Hmax_105 : 2.713 2.188 -0.173 2.494 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9565 0.0435 DFMC : 0.9319 0.0681

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 247 EDI_300750 MSSIGSGYDDSCTTFSPDGKVFQIDYAMKAVENSATALSIKCVDGVVFGVEKLIISKMIDKSSNKRIFNVGTHIGITCAG 80 FLPDARKLAKKAQEEAESFKENYGMNIPVKVLAEKIAMYMQNYTLYGSLRPFGCSLLIGGVDQHGYSLHYIEPSGTTYGY 160 FANGIGKGKQICKNELEKINFSQITCEEALIKLVEIIDLCHSEWKDKPYEIELSWISEKTNNIVKKVDKEMKQKIIDQAR 240 NKQMHQN 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ....... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ EDI_300750 20 TFSPDGK|VF 0.065 . EDI_300750 29 QIDYAMK|AV 0.084 . EDI_300750 41 ATALSIK|CV 0.103 . EDI_300750 52 VVFGVEK|LI 0.060 . EDI_300750 57 EKLIISK|MI 0.061 . EDI_300750 61 ISKMIDK|SS 0.078 . EDI_300750 65 IDKSSNK|RI 0.069 . EDI_300750 66 DKSSNKR|IF 0.213 . EDI_300750 86 GFLPDAR|KL 0.077 . EDI_300750 87 FLPDARK|LA 0.089 . EDI_300750 90 DARKLAK|KA 0.078 . EDI_300750 91 ARKLAKK|AQ 0.148 . EDI_300750 100 EEAESFK|EN 0.065 . EDI_300750 110 GMNIPVK|VL 0.075 . EDI_300750 115 VKVLAEK|IA 0.068 . EDI_300750 130 TLYGSLR|PF 0.123 . EDI_300750 167 FANGIGK|GK 0.066 . EDI_300750 169 NGIGKGK|QI 0.077 . EDI_300750 173 KGKQICK|NE 0.059 . EDI_300750 178 CKNELEK|IN 0.069 . EDI_300750 192 CEEALIK|LV 0.076 . EDI_300750 205 LCHSEWK|DK 0.072 . EDI_300750 207 HSEWKDK|PY 0.084 . EDI_300750 219 LSWISEK|TN 0.064 . EDI_300750 225 KTNNIVK|KV 0.093 . EDI_300750 226 TNNIVKK|VD 0.130 . EDI_300750 229 IVKKVDK|EM 0.067 . EDI_300750 232 KVDKEMK|QK 0.063 . EDI_300750 234 DKEMKQK|II 0.086 . EDI_300750 240 KIIDQAR|NK 0.099 . EDI_300750 242 IDQARNK|QM 0.072 . ____________________________^_________________

Fasta :-
>EDI_300750 ATGAGTTCAATTGGATCAGGATATGATGATTCATGTACAACCTTTTCACCTGATGGAAAG GTATTTCAAATTGACTACGCAATGAAAGCAGTTGAAAACAGTGCAACAGCACTTTCAATT AAGTGTGTTGATGGAGTAGTATTTGGAGTAGAAAAGTTAATAATATCAAAAATGATTGAT AAATCATCAAACAAACGTATATTTAATGTCGGTACTCATATTGGAATCACTTGCGCTGGA TTTCTTCCTGATGCAAGAAAATTAGCTAAGAAAGCACAAGAAGAAGCTGAGTCATTCAAA GAAAATTATGGAATGAATATTCCAGTAAAAGTATTAGCAGAAAAGATTGCTATGTATATG CAAAATTATACATTGTATGGATCATTAAGACCATTTGGATGTAGTTTATTAATAGGAGGA GTTGATCAACATGGATATTCCCTTCATTACATTGAACCATCAGGAACAACATATGGATAT TTTGCTAATGGAATTGGTAAAGGAAAACAAATATGTAAAAATGAGTTAGAAAAAATAAAT TTCTCACAAATCACATGTGAAGAGGCATTAATTAAACTTGTAGAAATTATTGATTTATGT CATAGTGAATGGAAAGACAAACCATATGAGATTGAATTAAGTTGGATCTCGGAAAAGACT AATAACATAGTTAAGAAAGTTGATAAAGAAATGAAACAAAAAATTATTGACCAAGCTCGT AATAAACAAATGCATCAGAATTAA
Download Fasta

Fasta :-

MSSIGSGYDDSCTTFSPDGKVFQIDYAMKAVENSATALSIKCVDGVVFGVEKLIISKMID KSSNKRIFNVGTHIGITCAGFLPDARKLAKKAQEEAESFKENYGMNIPVKVLAEKIAMYM QNYTLYGSLRPFGCSLLIGGVDQHGYSLHYIEPSGTTYGYFANGIGKGKQICKNELEKIN FSQITCEEALIKLVEIIDLCHSEWKDKPYEIELSWISEKTNNIVKKVDKEMKQKIIDQAR NKQMHQN

Proteasome subunits

title: active site
coordinates: A35,E51,L53,R66,K167

	ID	Site	Position	Gscore	Iscore
	EDI_300750	S	2	0.522	0.053

	ID	Site	Position	Gscore	Iscore
	EDI_300750	S	2	0.522	0.053

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	EDI_300750	6 S	SSIGSGYDD	0.993	unsp	EDI_300750	98 S	EEAESFKEN	0.996	unsp

EDI_300750 | proteasome subunit alpha type-3, putative

ID's

UniProt_ID: B0E727

GEO Functions

Computed_GO_Component_IDs: GO:0005839 GO:0019773

Computed_GO_Components: proteasome core complex proteasome core complex, alpha-subunit complex

Computed_GO_Function_IDs: GO:0004175 GO:0004298

Computed_GO_Functions: endopeptidase activity threonine-type endopeptidase activity

Computed_GO_Process_IDs: GO:0051603 GO:0006511

Computed_GO_Processes: proteolysis involved in cellular protein catabolic process ubiquitin-dependent protein catabolic process

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Proteasome subunits

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

EDI_300750

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India