EDI_334860 | proteasome subunit beta type 7

_IDPredictionOTHERSPmTPCS_Position
EDI_334860OTHER0.9999060.0000600.000034
No Results

  • Fasta :-

    >EDI_334860 MNMSNDPLPIATSYVNDKTKFLKTGTTICGLVCEQGQTVVLACDSRATVGPIVADKACMK LHKLAPNIYCGGAGTAADLTHATNFIATKLGVHRFTIGQMPRVDTAVTMLKRHLFPYVNV CVIDKNGVEEKLNIEHPNDRKFKNPDFKGFPKKLEILKKTVIPIEHEEEDFKDQKQMELE
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/EDI_334860.fa Sequence name : EDI_334860 Sequence length : 180 VALUES OF COMPUTED PARAMETERS Coef20 : 3.460 CoefTot : -0.156 ChDiff : 2 ZoneTo : 5 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.712 1.253 0.244 0.401 MesoH : -0.207 0.460 -0.205 0.226 MuHd_075 : 10.832 8.630 3.810 2.577 MuHd_095 : 28.847 17.360 7.681 4.221 MuHd_100 : 23.071 15.712 5.844 3.668 MuHd_105 : 13.115 11.380 3.649 2.792 Hmax_075 : 3.967 6.300 -1.163 3.197 Hmax_095 : 12.000 8.600 1.094 3.350 Hmax_100 : 7.400 6.700 -0.443 2.450 Hmax_105 : 1.138 3.587 -1.885 1.960 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9722 0.0278 DFMC : 0.9779 0.0221
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 180 EDI_334860 MNMSNDPLPIATSYVNDKTKFLKTGTTICGLVCEQGQTVVLACDSRATVGPIVADKACMKLHKLAPNIYCGGAGTAADLT 80 HATNFIATKLGVHRFTIGQMPRVDTAVTMLKRHLFPYVNVCVIDKNGVEEKLNIEHPNDRKFKNPDFKGFPKKLEILKKT 160 VIPIEHEEEDFKDQKQMELE 240 ................................................................................ 80 ................................................................................ 160 .................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ EDI_334860 18 TSYVNDK|TK 0.069 . EDI_334860 20 YVNDKTK|FL 0.089 . EDI_334860 23 DKTKFLK|TG 0.062 . EDI_334860 46 VLACDSR|AT 0.077 . EDI_334860 56 GPIVADK|AC 0.065 . EDI_334860 60 ADKACMK|LH 0.058 . EDI_334860 63 ACMKLHK|LA 0.070 . EDI_334860 89 TNFIATK|LG 0.061 . EDI_334860 94 TKLGVHR|FT 0.134 . EDI_334860 102 TIGQMPR|VD 0.098 . EDI_334860 111 TAVTMLK|RH 0.051 . EDI_334860 112 AVTMLKR|HL 0.157 . EDI_334860 125 NVCVIDK|NG 0.054 . EDI_334860 131 KNGVEEK|LN 0.066 . EDI_334860 140 IEHPNDR|KF 0.071 . EDI_334860 141 EHPNDRK|FK 0.080 . EDI_334860 143 PNDRKFK|NP 0.154 . EDI_334860 148 FKNPDFK|GF 0.083 . EDI_334860 152 DFKGFPK|KL 0.073 . EDI_334860 153 FKGFPKK|LE 0.092 . EDI_334860 158 KKLEILK|KT 0.059 . EDI_334860 159 KLEILKK|TV 0.260 . EDI_334860 172 HEEEDFK|DQ 0.071 . EDI_334860 175 EDFKDQK|QM 0.062 . ____________________________^_________________

  • Fasta :-

    >EDI_334860 ATGAATATGTCTAATGACCCTTTACCAATTGCAACTTCTTACGTTAATGACAAAACTAAG TTTTTAAAAACAGGTACAACTATTTGTGGATTAGTTTGTGAACAAGGACAAACTGTTGTA TTGGCGTGCGATTCACGTGCAACTGTTGGGCCAATTGTAGCAGATAAAGCTTGCATGAAA TTACATAAATTAGCACCAAATATTTATTGTGGTGGAGCAGGTACTGCTGCTGATTTAACT CATGCAACAAACTTTATTGCCACAAAACTTGGAGTTCATCGATTTACTATTGGACAAATG CCAAGAGTTGATACTGCTGTTACTATGCTTAAAAGACATTTGTTTCCTTATGTCAACGTA TGTGTAATTGATAAAAATGGAGTGGAAGAAAAATTAAATATCGAACATCCAAATGATAGA AAATTCAAGAATCCAGACTTCAAAGGATTCCCTAAGAAGCTTGAAATTCTCAAGAAAACA GTTATTCCTATTGAACATGAAGAAGAAGATTTTAAAGATCAGAAACAAATGGAGTTAGAA TAA
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  • Fasta :-

    MNMSNDPLPIATSYVNDKTKFLKTGTTICGLVCEQGQTVVLACDSRATVGPIVADKACMK LHKLAPNIYCGGAGTAADLTHATNFIATKLGVHRFTIGQMPRVDTAVTMLKRHLFPYVNV CVIDKNGVEEKLNIEHPNDRKFKNPDFKGFPKKLEILKKTVIPIEHEEEDFKDQKQMELE

  • title: active site
  • coordinates: T26,D44,R46,K60
No Results
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EDI_334860      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India