_IDPredictionOTHERSPmTPCS_Position
EDI_335240OTHER0.9999680.0000070.000025
No Results
  • Fasta :-

    >EDI_335240 MQATGKPHSKTTKSKKSGSKANKKPTTSSVKPTTPTTPVDPSVIPPEIKEPTETLSTMYK DEKCFPEGENMQYTQEWNLQRFTSAEARERERALIDIEDYRKAAAIHKSVRQWAQQWIKP GMSDLFVAENIERKVREECEVDGVNTTERGMAFPCGLSVNSCAAHFTPNPNDPLSFYKTD DVVKIDFGVHVNGHLIDSAFTMTWDPTLQPILDCAKDATNTGIKNIGVDVRLCDIGDAIE EVMNSYEVEIKGKTYQLQPVRNLSGHMVGSYAVHAGKSIPICKGGPQTKMEEGEVYALET FATTGRGRVDDSGPASHYMVDANAFDYPVRDGNAKRLLRALDANFKTLAFCRRYVDKIGF AKWQMPFKFLVDDGCVNPYPPLSDCHGSYVAQFEHTIYLKPTCKEVLSRSFDY
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/EDI_335240.fa Sequence name : EDI_335240 Sequence length : 413 VALUES OF COMPUTED PARAMETERS Coef20 : 3.402 CoefTot : -2.356 ChDiff : -4 ZoneTo : 39 KR : 9 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.200 0.894 0.129 0.425 MesoH : -0.547 0.113 -0.407 0.195 MuHd_075 : 28.238 12.856 7.681 5.033 MuHd_095 : 36.783 14.101 11.397 6.869 MuHd_100 : 31.851 10.044 9.525 5.704 MuHd_105 : 37.286 13.853 10.912 7.083 Hmax_075 : -3.800 4.433 -3.116 -1.130 Hmax_095 : 4.550 -1.000 -0.832 1.310 Hmax_100 : 4.000 -3.300 -0.832 0.800 Hmax_105 : 5.600 -2.917 -0.402 0.945 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1569 0.8431 DFMC : 0.0547 0.9453 This protein is probably imported in chloroplast. f(Ser) = 0.1538 f(Arg) = 0.0000 CMi = 2.19780 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 413 EDI_335240 MQATGKPHSKTTKSKKSGSKANKKPTTSSVKPTTPTTPVDPSVIPPEIKEPTETLSTMYKDEKCFPEGENMQYTQEWNLQ 80 RFTSAEARERERALIDIEDYRKAAAIHKSVRQWAQQWIKPGMSDLFVAENIERKVREECEVDGVNTTERGMAFPCGLSVN 160 SCAAHFTPNPNDPLSFYKTDDVVKIDFGVHVNGHLIDSAFTMTWDPTLQPILDCAKDATNTGIKNIGVDVRLCDIGDAIE 240 EVMNSYEVEIKGKTYQLQPVRNLSGHMVGSYAVHAGKSIPICKGGPQTKMEEGEVYALETFATTGRGRVDDSGPASHYMV 320 DANAFDYPVRDGNAKRLLRALDANFKTLAFCRRYVDKIGFAKWQMPFKFLVDDGCVNPYPPLSDCHGSYVAQFEHTIYLK 400 PTCKEVLSRSFDY 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ............. 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ EDI_335240 6 -MQATGK|PH 0.066 . EDI_335240 10 TGKPHSK|TT 0.070 . EDI_335240 13 PHSKTTK|SK 0.096 . EDI_335240 15 SKTTKSK|KS 0.077 . EDI_335240 16 KTTKSKK|SG 0.206 . EDI_335240 20 SKKSGSK|AN 0.065 . EDI_335240 23 SGSKANK|KP 0.067 . EDI_335240 24 GSKANKK|PT 0.104 . EDI_335240 31 PTTSSVK|PT 0.061 . EDI_335240 49 VIPPEIK|EP 0.061 . EDI_335240 60 TLSTMYK|DE 0.082 . EDI_335240 63 TMYKDEK|CF 0.075 . EDI_335240 81 QEWNLQR|FT 0.124 . EDI_335240 88 FTSAEAR|ER 0.113 . EDI_335240 90 SAEARER|ER 0.068 . EDI_335240 92 EARERER|AL 0.117 . EDI_335240 101 IDIEDYR|KA 0.102 . EDI_335240 102 DIEDYRK|AA 0.073 . EDI_335240 108 KAAAIHK|SV 0.133 . EDI_335240 111 AIHKSVR|QW 0.135 . EDI_335240 119 WAQQWIK|PG 0.062 . EDI_335240 133 VAENIER|KV 0.092 . EDI_335240 134 AENIERK|VR 0.084 . EDI_335240 136 NIERKVR|EE 0.207 . EDI_335240 149 GVNTTER|GM 0.078 . EDI_335240 178 DPLSFYK|TD 0.066 . EDI_335240 184 KTDDVVK|ID 0.061 . EDI_335240 216 PILDCAK|DA 0.069 . EDI_335240 224 ATNTGIK|NI 0.067 . EDI_335240 231 NIGVDVR|LC 0.096 . EDI_335240 251 SYEVEIK|GK 0.066 . EDI_335240 253 EVEIKGK|TY 0.060 . EDI_335240 261 YQLQPVR|NL 0.091 . EDI_335240 277 YAVHAGK|SI 0.081 . EDI_335240 283 KSIPICK|GG 0.065 . EDI_335240 289 KGGPQTK|ME 0.072 . EDI_335240 306 TFATTGR|GR 0.074 . EDI_335240 308 ATTGRGR|VD 0.085 . EDI_335240 330 AFDYPVR|DG 0.089 . EDI_335240 335 VRDGNAK|RL 0.067 . EDI_335240 336 RDGNAKR|LL 0.183 . EDI_335240 339 NAKRLLR|AL 0.332 . EDI_335240 346 ALDANFK|TL 0.056 . EDI_335240 352 KTLAFCR|RY 0.082 . EDI_335240 353 TLAFCRR|YV 0.494 . EDI_335240 357 CRRYVDK|IG 0.083 . EDI_335240 362 DKIGFAK|WQ 0.067 . EDI_335240 368 KWQMPFK|FL 0.072 . EDI_335240 400 EHTIYLK|PT 0.061 . EDI_335240 404 YLKPTCK|EV 0.061 . EDI_335240 409 CKEVLSR|SF 0.150 . ____________________________^_________________
  • Fasta :-

    >EDI_335240 ATGCAAGCCACTGGAAAACCACACTCAAAAACTACTAAATCTAAAAAGTCAGGTTCAAAA GCTAATAAAAAACCAACAACTTCAAGTGTTAAACCAACTACACCAACTACACCAGTTGAC CCATCAGTAATTCCACCTGAAATTAAAGAACCAACTGAAACTTTATCTACTATGTATAAA GATGAAAAGTGCTTCCCAGAAGGAGAAAATATGCAATATACACAAGAATGGAATTTACAA AGATTCACAAGTGCTGAAGCCAGAGAACGTGAAAGAGCATTAATTGATATTGAAGATTAT AGAAAAGCTGCAGCAATTCATAAAAGTGTTAGACAATGGGCTCAACAATGGATTAAACCA GGAATGTCAGATCTTTTTGTTGCAGAAAATATTGAGAGAAAAGTTAGAGAAGAATGTGAA GTTGATGGAGTAAATACTACAGAACGAGGTATGGCTTTTCCTTGTGGCCTTTCTGTAAAT TCATGTGCAGCACATTTCACACCAAATCCAAACGATCCATTATCATTCTATAAAACTGAT GATGTTGTTAAAATTGACTTTGGGGTACATGTTAATGGACATTTAATTGATTCAGCTTTC ACTATGACTTGGGACCCTACTTTACAACCAATTCTTGATTGTGCTAAAGACGCTACTAAT ACAGGTATTAAAAATATTGGTGTTGATGTTAGATTATGTGATATAGGTGATGCTATTGAA GAAGTTATGAACAGTTATGAAGTTGAAATTAAAGGAAAAACTTATCAATTACAACCAGTA AGAAATCTTTCTGGACATATGGTTGGTTCATATGCAGTTCATGCTGGTAAGTCTATTCCA ATTTGTAAAGGTGGACCTCAAACTAAAATGGAAGAAGGTGAGGTTTATGCTCTTGAAACA TTTGCTACTACTGGAAGAGGGCGTGTTGATGATTCAGGACCTGCTTCTCATTATATGGTT GATGCTAATGCATTTGATTATCCAGTTAGAGATGGAAATGCAAAGAGATTACTTCGTGCA CTTGATGCTAATTTCAAGACATTAGCTTTTTGTAGAAGATATGTTGATAAAATTGGATTT GCTAAATGGCAAATGCCATTTAAATTCCTTGTTGATGATGGATGTGTTAATCCATATCCA CCATTATCAGATTGTCATGGAAGTTATGTTGCACAATTTGAACATACCATTTATCTTAAG CCAACTTGTAAAGAAGTTCTTTCAAGAAGTTTTGATTATTAA
  • Download Fasta
  • Fasta :-

    MQATGKPHSKTTKSKKSGSKANKKPTTSSVKPTTPTTPVDPSVIPPEIKEPTETLSTMYK DEKCFPEGENMQYTQEWNLQRFTSAEARERERALIDIEDYRKAAAIHKSVRQWAQQWIKP GMSDLFVAENIERKVREECEVDGVNTTERGMAFPCGLSVNSCAAHFTPNPNDPLSFYKTD DVVKIDFGVHVNGHLIDSAFTMTWDPTLQPILDCAKDATNTGIKNIGVDVRLCDIGDAIE EVMNSYEVEIKGKTYQLQPVRNLSGHMVGSYAVHAGKSIPICKGGPQTKMEEGEVYALET FATTGRGRVDDSGPASHYMVDANAFDYPVRDGNAKRLLRALDANFKTLAFCRRYVDKIGF AKWQMPFKFLVDDGCVNPYPPLSDCHGSYVAQFEHTIYLKPTCKEVLSRSFDY

  • title: active site
  • coordinates: H165,D186,D197,H266,E299,E394
IDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscore
EDI_335240T330.7120.650EDI_335240T370.7120.146EDI_335240T260.7070.117EDI_335240T270.7050.186EDI_335240T360.7050.697EDI_335240T340.7010.256EDI_335240S420.6510.500EDI_335240S290.5990.253EDI_335240T40.5920.431EDI_335240S280.5900.070EDI_335240T520.5410.074EDI_335240T120.5270.031EDI_335240S190.5250.028EDI_335240T110.5100.026
IDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscore
EDI_335240T330.7120.650EDI_335240T370.7120.146EDI_335240T260.7070.117EDI_335240T270.7050.186EDI_335240T360.7050.697EDI_335240T340.7010.256EDI_335240S420.6510.500EDI_335240S290.5990.253EDI_335240T40.5920.431EDI_335240S280.5900.070EDI_335240T520.5410.074EDI_335240T120.5270.031EDI_335240S190.5250.028EDI_335240T110.5100.026
IDSitePeptideScoreMethod
EDI_33524014 SKTTKSKKSG0.995unsp

EDI_335240      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India