EDI_336480 | ubiquitin carboxyl-terminal hydrolase, putative

_IDPredictionOTHERSPmTPCS_Position
EDI_336480OTHER0.9952770.0002800.004444
No Results

  • Fasta :-

    >EDI_336480 MSKYVGRLFSPRDDHVKKFFSNYPICGIRNLGNTCFISSVLQSLANTQQIRSYCYHHYNP IKGRAGDKSVYHGSLLNAFINLTNAIWSGNYRFVTSLAIKDIVSETHPQYKGKEQNDAHE FLLIFLEILEKELNTKDINDFSSSISPQLLSPIPCRGTIKTYSRETSPSKEYYSPFEVEM NEIGSDDSSSDYYFSKNLISDVFRGRIKRVTECSICHSSSETFEEFISLSVPVPQWYSNE THPISLESCIELFLHYENVEDWYCEECNQKRKAKIYSTINDIPKVLIIQLVRIYSKKYPT QQVLFPLNDLVVQTSPNHFDFYDLYSFITHTGSLSKGHYISWNRVLDQWYCCNDENVSQS KPNTSSDTVYILFYKRKVS
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/EDI_336480.fa Sequence name : EDI_336480 Sequence length : 379 VALUES OF COMPUTED PARAMETERS Coef20 : 3.745 CoefTot : -0.157 ChDiff : -3 ZoneTo : 12 KR : 3 DE : 0 CleavSite : 17 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.788 1.159 0.129 0.445 MesoH : -0.600 0.036 -0.401 0.160 MuHd_075 : 44.627 16.061 10.479 8.466 MuHd_095 : 33.095 25.504 9.641 7.553 MuHd_100 : 38.283 25.897 10.593 7.935 MuHd_105 : 31.717 19.838 8.266 6.187 Hmax_075 : 5.133 1.633 -2.032 2.053 Hmax_095 : 2.100 11.100 -0.507 2.900 Hmax_100 : 3.400 11.600 -0.240 2.460 Hmax_105 : -2.100 6.500 -0.979 1.420 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.4132 0.5868 DFMC : 0.5618 0.4382
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 379 EDI_336480 MSKYVGRLFSPRDDHVKKFFSNYPICGIRNLGNTCFISSVLQSLANTQQIRSYCYHHYNPIKGRAGDKSVYHGSLLNAFI 80 NLTNAIWSGNYRFVTSLAIKDIVSETHPQYKGKEQNDAHEFLLIFLEILEKELNTKDINDFSSSISPQLLSPIPCRGTIK 160 TYSRETSPSKEYYSPFEVEMNEIGSDDSSSDYYFSKNLISDVFRGRIKRVTECSICHSSSETFEEFISLSVPVPQWYSNE 240 THPISLESCIELFLHYENVEDWYCEECNQKRKAKIYSTINDIPKVLIIQLVRIYSKKYPTQQVLFPLNDLVVQTSPNHFD 320 FYDLYSFITHTGSLSKGHYISWNRVLDQWYCCNDENVSQSKPNTSSDTVYILFYKRKVS 400 ................................................................................ 80 ................................................................................ 160 ................................................P............................... 240 ................................................................................ 320 ........................................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ EDI_336480 3 ----MSK|YV 0.088 . EDI_336480 7 MSKYVGR|LF 0.119 . EDI_336480 12 GRLFSPR|DD 0.132 . EDI_336480 17 PRDDHVK|KF 0.066 . EDI_336480 18 RDDHVKK|FF 0.150 . EDI_336480 29 YPICGIR|NL 0.086 . EDI_336480 51 ANTQQIR|SY 0.116 . EDI_336480 62 HHYNPIK|GR 0.065 . EDI_336480 64 YNPIKGR|AG 0.128 . EDI_336480 68 KGRAGDK|SV 0.099 . EDI_336480 92 IWSGNYR|FV 0.139 . EDI_336480 100 VTSLAIK|DI 0.073 . EDI_336480 111 ETHPQYK|GK 0.087 . EDI_336480 113 HPQYKGK|EQ 0.087 . EDI_336480 131 FLEILEK|EL 0.057 . EDI_336480 136 EKELNTK|DI 0.072 . EDI_336480 156 LSPIPCR|GT 0.099 . EDI_336480 160 PCRGTIK|TY 0.065 . EDI_336480 164 TIKTYSR|ET 0.105 . EDI_336480 170 RETSPSK|EY 0.058 . EDI_336480 196 SDYYFSK|NL 0.068 . EDI_336480 204 LISDVFR|GR 0.105 . EDI_336480 206 SDVFRGR|IK 0.093 . EDI_336480 208 VFRGRIK|RV 0.065 . EDI_336480 209 FRGRIKR|VT 0.716 *ProP* EDI_336480 270 CEECNQK|RK 0.059 . EDI_336480 271 EECNQKR|KA 0.161 . EDI_336480 272 ECNQKRK|AK 0.089 . EDI_336480 274 NQKRKAK|IY 0.278 . EDI_336480 284 TINDIPK|VL 0.075 . EDI_336480 292 LIIQLVR|IY 0.103 . EDI_336480 296 LVRIYSK|KY 0.063 . EDI_336480 297 VRIYSKK|YP 0.148 . EDI_336480 336 HTGSLSK|GH 0.060 . EDI_336480 344 HYISWNR|VL 0.080 . EDI_336480 361 ENVSQSK|PN 0.065 . EDI_336480 375 VYILFYK|RK 0.055 . EDI_336480 376 YILFYKR|KV 0.206 . EDI_336480 377 ILFYKRK|VS 0.090 . ____________________________^_________________

  • Fasta :-

    >EDI_336480 ATGAGTAAGTATGTGGGAAGATTATTCTCACCTCGTGATGACCATGTCAAGAAGTTCTTT TCAAACTATCCAATTTGTGGAATCAGAAATTTAGGAAACACTTGTTTTATCAGTTCAGTT TTACAATCTCTAGCTAACACTCAACAAATTCGGTCATACTGTTATCATCACTACAATCCA ATTAAAGGAAGAGCAGGAGATAAGTCAGTATATCATGGATCTCTTCTAAATGCATTTATC AATCTAACAAACGCTATTTGGTCAGGAAATTATAGATTTGTAACTTCTTTAGCAATTAAA GATATTGTATCAGAAACACATCCACAGTATAAGGGAAAGGAACAAAATGATGCACATGAA TTTTTGTTAATCTTTCTTGAAATCTTAGAAAAAGAATTAAATACAAAAGATATAAATGAT TTCTCTTCTTCTATTTCACCACAACTTCTCTCTCCAATTCCATGTAGAGGTACAATAAAA ACATATTCTCGTGAAACTTCTCCTTCAAAAGAATATTATTCTCCATTTGAAGTTGAAATG AATGAGATTGGATCTGATGATTCATCTTCAGACTATTACTTTTCAAAAAATCTTATTAGT GATGTTTTTAGAGGAAGAATTAAAAGAGTAACTGAATGTTCAATCTGTCATTCTAGTTCA GAGACTTTTGAGGAATTTATTTCATTATCAGTTCCAGTACCTCAATGGTATTCAAATGAA ACACACCCAATCTCATTAGAGAGTTGTATTGAATTATTTCTTCACTATGAAAATGTAGAG GATTGGTATTGTGAAGAATGTAATCAAAAGAGAAAAGCTAAAATATATTCAACTATCAAT GACATTCCTAAAGTTTTAATTATTCAATTGGTTAGAATATATTCAAAGAAATACCCAACT CAACAAGTCTTGTTTCCTTTAAATGACTTAGTGGTCCAAACATCACCTAACCATTTTGAT TTTTATGATTTATATTCTTTTATCACTCATACAGGATCACTATCAAAAGGCCATTATATA TCATGGAATAGAGTATTAGATCAATGGTACTGTTGCAACGATGAAAATGTTTCTCAGTCT AAACCTAATACATCATCTGATACTGTGTACATTCTCTTTTATAAAAGGAAGGTAAGTTGA
  • Download Fasta

  • Fasta :-

    MSKYVGRLFSPRDDHVKKFFSNYPICGIRNLGNTCFISSVLQSLANTQQIRSYCYHHYNP IKGRAGDKSVYHGSLLNAFINLTNAIWSGNYRFVTSLAIKDIVSETHPQYKGKEQNDAHE FLLIFLEILEKELNTKDINDFSSSISPQLLSPIPCRGTIKTYSRETSPSKEYYSPFEVEM NEIGSDDSSSDYYFSKNLISDVFRGRIKRVTECSICHSSSETFEEFISLSVPVPQWYSNE THPISLESCIELFLHYENVEDWYCEECNQKRKAKIYSTINDIPKVLIIQLVRIYSKKYPT QQVLFPLNDLVVQTSPNHFDFYDLYSFITHTGSLSKGHYISWNRVLDQWYCCNDENVSQS KPNTSSDTVYILFYKRKVS

  • title: Active Site
  • coordinates: N30,C35,H338,D354
IDSitePositionGscoreIscoreIDSitePositionGscoreIscore
EDI_336480T1610.5050.045EDI_336480T1580.5000.028
IDSitePositionGscoreIscoreIDSitePositionGscoreIscore
EDI_336480T1610.5050.045EDI_336480T1580.5000.028
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
EDI_336480174 SKEYYSPFEV0.992unspEDI_336480174 SKEYYSPFEV0.992unspEDI_336480174 SKEYYSPFEV0.992unspEDI_336480188 SGSDDSSSDY0.995unspEDI_33648010 SGRLFSPRDD0.997unspEDI_336480167 SSRETSPSKE0.995unsp

EDI_336480      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India