EDI_341920 | proteasome subunit beta type-6 precursor, putative

_IDPredictionOTHERSPmTPCS_Position
EDI_341920OTHER0.9839250.0152480.000827
No Results

  • Fasta :-

    >EDI_341920 MEFTHNAYQPISLGTTIIGVVYNGGVLLGADGRTSMGSIVVNRCKNKIRMVSDSIGMCMA GTSAHSETIADYVRHSLRMYTAQTREEPTVLAAATSTRNIIYGNKSFLSSSVICGGYDSV NGATLYRILQSGAMKQDDICVGGSGSTYIWGYCDAHFKKDMTFEEAKQFIITAVSLAIYR DGSSGGIIHTVNITSEGVQSEFITGDKVPVPQN
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/EDI_341920.fa Sequence name : EDI_341920 Sequence length : 213 VALUES OF COMPUTED PARAMETERS Coef20 : 3.556 CoefTot : -2.802 ChDiff : -1 ZoneTo : 66 KR : 5 DE : 3 CleavSite : 51 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.429 1.476 0.253 0.658 MesoH : -0.340 0.293 -0.253 0.204 MuHd_075 : 26.075 19.773 8.422 6.630 MuHd_095 : 30.972 27.544 11.176 7.373 MuHd_100 : 35.795 30.044 13.253 8.331 MuHd_105 : 39.689 31.386 13.573 8.677 Hmax_075 : 12.950 13.417 4.157 4.655 Hmax_095 : 15.400 23.300 5.208 6.210 Hmax_100 : 16.600 23.300 6.877 6.210 Hmax_105 : 6.300 15.487 3.396 3.412 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9367 0.0633 DFMC : 0.9536 0.0464
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 213 EDI_341920 MEFTHNAYQPISLGTTIIGVVYNGGVLLGADGRTSMGSIVVNRCKNKIRMVSDSIGMCMAGTSAHSETIADYVRHSLRMY 80 TAQTREEPTVLAAATSTRNIIYGNKSFLSSSVICGGYDSVNGATLYRILQSGAMKQDDICVGGSGSTYIWGYCDAHFKKD 160 MTFEEAKQFIITAVSLAIYRDGSSGGIIHTVNITSEGVQSEFITGDKVPVPQN 240 ................................................................................ 80 ................................................................................ 160 ..................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ EDI_341920 33 LLGADGR|TS 0.086 . EDI_341920 43 GSIVVNR|CK 0.127 . EDI_341920 45 IVVNRCK|NK 0.062 . EDI_341920 47 VNRCKNK|IR 0.066 . EDI_341920 49 RCKNKIR|MV 0.267 . EDI_341920 74 TIADYVR|HS 0.080 . EDI_341920 78 YVRHSLR|MY 0.122 . EDI_341920 85 MYTAQTR|EE 0.079 . EDI_341920 98 AAATSTR|NI 0.122 . EDI_341920 105 NIIYGNK|SF 0.061 . EDI_341920 127 NGATLYR|IL 0.085 . EDI_341920 135 LQSGAMK|QD 0.078 . EDI_341920 158 YCDAHFK|KD 0.062 . EDI_341920 159 CDAHFKK|DM 0.173 . EDI_341920 167 MTFEEAK|QF 0.063 . EDI_341920 180 VSLAIYR|DG 0.097 . EDI_341920 207 EFITGDK|VP 0.052 . ____________________________^_________________

  • Fasta :-

    >EDI_341920 ATGGAATTCACACATAATGCATATCAACCTATTTCACTTGGAACGACAATCATTGGAGTT GTTTATAATGGTGGTGTTCTTCTTGGAGCTGATGGTAGAACTTCAATGGGAAGTATAGTA GTTAATCGATGTAAAAATAAAATTCGTATGGTTTCTGATTCTATTGGAATGTGTATGGCT GGAACTTCAGCTCATAGTGAAACGATTGCAGATTATGTTAGACATTCATTAAGAATGTAT ACTGCTCAAACTAGAGAAGAACCAACTGTACTTGCTGCTGCTACGTCAACAAGAAATATT ATTTATGGAAATAAATCATTCCTTTCATCATCAGTTATATGTGGTGGATATGACTCAGTT AATGGAGCAACATTATATCGTATACTTCAAAGTGGAGCTATGAAACAAGATGATATATGT GTTGGAGGAAGTGGTTCAACATATATTTGGGGATATTGTGATGCTCATTTTAAAAAGGAT ATGACTTTTGAAGAAGCCAAACAATTTATTATTACAGCTGTTTCATTAGCAATTTATCGT GATGGTTCATCTGGAGGAATTATCCATACCGTAAATATAACATCAGAAGGTGTTCAATCT GAATTTATTACTGGAGATAAAGTCCCTGTGCCACAAAATTAA
  • Download Fasta

  • Fasta :-

    MEFTHNAYQPISLGTTIIGVVYNGGVLLGADGRTSMGSIVVNRCKNKIRMVSDSIGMCMA GTSAHSETIADYVRHSLRMYTAQTREEPTVLAAATSTRNIIYGNKSFLSSSVICGGYDSV NGATLYRILQSGAMKQDDICVGGSGSTYIWGYCDAHFKKDMTFEEAKQFIITAVSLAIYR DGSSGGIIHTVNITSEGVQSEFITGDKVPVPQN

  • title: active site
  • coordinates: T15,D31,R33,K47,S144,D181,S184,G185
IDSitePositionGscoreIscore
EDI_341920T2040.5180.079
IDSitePositionGscoreIscore
EDI_341920T2040.5180.079
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
EDI_34192035 SDGRTSMGSI0.993unspEDI_34192076 SYVRHSLRMY0.996unsp

EDI_341920      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India