EHI_021300 | lecithin:cholesterol acyltransferase domain-containing protein

_IDPredictionOTHERSPmTPCS_Position
EHI_021300SP0.0282230.9704920.001285CS pos: 16-17. TIA-CS. Pr: 0.5692
No Results

  • Fasta :-

    >EHI_021300 MLILLFIFIWFDFTIACSSRFPIVFVPAFMSSSLHIKSNIPSSIQLPSHCPHQLEGQIWL NLKDGIPLNNTQCFFKYFTPFWNNSNKHFESLDGVQIYYKDFPSIEGISSLGPKEEPIVQ RVLRVWYKMIQQLKRIGYKDKKSLFGLGYDWRYADVNYNNWSKKVKEVIESAYILNNKKV MIVTHSLGGPMALQLLFQLGDSFCEKYIEKIITISAPFIGTIKALRSFLSGETEGIPVNP LSFRNFERNIDSVYQLMPNYQWWNDTILIFNGTSYSASQMNQILNLINETKDYASFIYTN AMNRYPINWTPKVKLYCLYSSGIETEVLLNYSTSFDNQPIQTFGDGDGTVPLNSLSFCKT MNLEESINIGKYDHFGIIKAQKTIDYVIEQSCKTT
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/EHI_021300.fa Sequence name : EHI_021300 Sequence length : 395 VALUES OF COMPUTED PARAMETERS Coef20 : 5.105 CoefTot : -0.620 ChDiff : 2 ZoneTo : 54 KR : 2 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.147 2.453 0.377 0.889 MesoH : 0.250 0.614 -0.224 0.348 MuHd_075 : 15.148 17.409 6.235 4.824 MuHd_095 : 25.381 17.164 8.734 5.205 MuHd_100 : 21.893 19.773 8.668 5.166 MuHd_105 : 19.728 21.731 9.315 4.619 Hmax_075 : 19.600 11.900 2.457 4.620 Hmax_095 : 19.425 6.000 0.739 3.480 Hmax_100 : 18.800 12.000 3.698 4.550 Hmax_105 : 16.300 15.050 4.435 4.818 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7509 0.2491 DFMC : 0.6673 0.3327
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 395 EHI_021300 MLILLFIFIWFDFTIACSSRFPIVFVPAFMSSSLHIKSNIPSSIQLPSHCPHQLEGQIWLNLKDGIPLNNTQCFFKYFTP 80 FWNNSNKHFESLDGVQIYYKDFPSIEGISSLGPKEEPIVQRVLRVWYKMIQQLKRIGYKDKKSLFGLGYDWRYADVNYNN 160 WSKKVKEVIESAYILNNKKVMIVTHSLGGPMALQLLFQLGDSFCEKYIEKIITISAPFIGTIKALRSFLSGETEGIPVNP 240 LSFRNFERNIDSVYQLMPNYQWWNDTILIFNGTSYSASQMNQILNLINETKDYASFIYTNAMNRYPINWTPKVKLYCLYS 320 SGIETEVLLNYSTSFDNQPIQTFGDGDGTVPLNSLSFCKTMNLEESINIGKYDHFGIIKAQKTIDYVIEQSCKTT 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ........................................................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ EHI_021300 20 TIACSSR|FP 0.108 . EHI_021300 37 SSSLHIK|SN 0.110 . EHI_021300 63 QIWLNLK|DG 0.065 . EHI_021300 76 NTQCFFK|YF 0.074 . EHI_021300 87 FWNNSNK|HF 0.073 . EHI_021300 100 GVQIYYK|DF 0.073 . EHI_021300 114 ISSLGPK|EE 0.070 . EHI_021300 121 EEPIVQR|VL 0.092 . EHI_021300 124 IVQRVLR|VW 0.341 . EHI_021300 128 VLRVWYK|MI 0.076 . EHI_021300 134 KMIQQLK|RI 0.069 . EHI_021300 135 MIQQLKR|IG 0.153 . EHI_021300 139 LKRIGYK|DK 0.069 . EHI_021300 141 RIGYKDK|KS 0.069 . EHI_021300 142 IGYKDKK|SL 0.148 . EHI_021300 152 GLGYDWR|YA 0.128 . EHI_021300 163 NYNNWSK|KV 0.080 . EHI_021300 164 YNNWSKK|VK 0.165 . EHI_021300 166 NWSKKVK|EV 0.106 . EHI_021300 178 AYILNNK|KV 0.079 . EHI_021300 179 YILNNKK|VM 0.065 . EHI_021300 206 GDSFCEK|YI 0.115 . EHI_021300 210 CEKYIEK|II 0.064 . EHI_021300 223 PFIGTIK|AL 0.061 . EHI_021300 226 GTIKALR|SF 0.126 . EHI_021300 244 VNPLSFR|NF 0.103 . EHI_021300 248 SFRNFER|NI 0.129 . EHI_021300 291 NLINETK|DY 0.071 . EHI_021300 304 YTNAMNR|YP 0.080 . EHI_021300 312 PINWTPK|VK 0.063 . EHI_021300 314 NWTPKVK|LY 0.059 . EHI_021300 359 NSLSFCK|TM 0.061 . EHI_021300 371 ESINIGK|YD 0.064 . EHI_021300 379 DHFGIIK|AQ 0.059 . EHI_021300 382 GIIKAQK|TI 0.081 . EHI_021300 393 VIEQSCK|TT 0.064 . ____________________________^_________________

  • Fasta :-

    >EHI_021300 ATGTTGATATTACTCTTTATATTTATATGGTTTGATTTTACTATTGCTTGCTCATCTAGA TTTCCTATTGTTTTTGTTCCTGCTTTCATGTCTTCTTCTCTTCATATTAAATCTAATATC CCGTCATCAATTCAATTACCTTCTCATTGTCCTCATCAATTAGAAGGACAAATTTGGTTG AATTTAAAAGATGGAATTCCATTAAATAATACTCAATGTTTCTTTAAATATTTTACTCCA TTTTGGAATAATTCAAATAAACACTTTGAATCACTTGATGGTGTTCAAATATATTACAAA GACTTTCCATCTATTGAAGGTATTTCTTCATTAGGACCAAAAGAAGAGCCAATTGTCCAA AGAGTATTACGAGTTTGGTATAAAATGATTCAACAACTTAAAAGAATTGGTTATAAAGAC AAAAAATCATTATTTGGACTTGGATATGATTGGAGATATGCTGATGTTAATTATAACAAT TGGTCAAAAAAAGTGAAAGAAGTCATTGAATCAGCTTATATTCTTAACAACAAAAAAGTT ATGATTGTTACACATAGTTTGGGTGGTCCAATGGCTTTGCAACTACTTTTCCAACTAGGT GATTCTTTTTGTGAGAAATATATTGAAAAGATTATTACTATCTCAGCTCCATTCATTGGA ACAATAAAAGCACTAAGGTCTTTTTTATCAGGAGAAACAGAAGGTATTCCAGTTAATCCA TTATCATTTAGAAATTTTGAAAGAAATATAGATAGTGTTTATCAATTAATGCCAAATTAT CAATGGTGGAATGACACTATTCTTATCTTTAATGGAACATCATACTCAGCTTCTCAAATG AATCAAATACTAAATCTTATAAATGAAACAAAGGATTATGCTTCTTTTATTTATACAAAT GCTATGAACAGATATCCAATAAACTGGACTCCTAAAGTTAAATTATATTGTCTCTATTCT TCTGGAATTGAAACAGAAGTCTTACTGAACTATTCTACTTCTTTTGACAATCAACCTATT CAAACTTTTGGTGATGGAGATGGTACTGTTCCTTTAAACTCACTATCTTTTTGTAAAACA ATGAATTTAGAAGAGAGTATCAATATAGGGAAATATGACCACTTCGGTATTATCAAAGCT CAGAAAACCATTGACTATGTTATTGAACAAAGTTGTAAAACAACCTAA
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  • Fasta :-

    MLILLFIFIWFDFTIACSSRFPIVFVPAFMSSSLHIKSNIPSSIQLPSHCPHQLEGQIWL NLKDGIPLNNTQCFFKYFTPFWNNSNKHFESLDGVQIYYKDFPSIEGISSLGPKEEPIVQ RVLRVWYKMIQQLKRIGYKDKKSLFGLGYDWRYADVNYNNWSKKVKEVIESAYILNNKKV MIVTHSLGGPMALQLLFQLGDSFCEKYIEKIITISAPFIGTIKALRSFLSGETEGIPVNP LSFRNFERNIDSVYQLMPNYQWWNDTILIFNGTSYSASQMNQILNLINETKDYASFIYTN AMNRYPINWTPKVKLYCLYSSGIETEVLLNYSTSFDNQPIQTFGDGDGTVPLNSLSFCKT MNLEESINIGKYDHFGIIKAQKTIDYVIEQSCKTT

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EHI_021300      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India