EHI_060330 | peptidase S54 (rhomboid) family protein

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
EHI_060330OTHER0.9999970.0000020.000001
No Results

  • Fasta :-

    >EHI_060330 MNDNKQEIPLDLESIIISPSQCYLYGIDGNVQEISNENSIKEICFYSYFPCFIQPICRID NLKRYLYFFISVTFIITAIETIWFFISVLFEYEKNSSILIPTANSIKIVGGKNLSLIKCE YQYFRLVLPIFLQNNILQLIVTIIIQLKFGIIVERILGSSWYFIMYIVCGTMSLFGSYLF AYELPFIGCSSSLIGIMTIWVLQMIIQKEKYHPIVWVQLFVSAIFSIFVIIGSCLFTPID NGISFIFSFGTGILFGLTYFGDNFKSCLTNLFFKWANRILPILLYFSLLTLTILAIRFVL PVSCHSTKTVS
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/EHI_060330.fa Sequence name : EHI_060330 Sequence length : 311 VALUES OF COMPUTED PARAMETERS Coef20 : 3.243 CoefTot : -0.134 ChDiff : 1 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.447 2.582 0.572 0.878 MesoH : 1.223 1.428 0.133 0.588 MuHd_075 : 10.047 6.832 1.502 1.785 MuHd_095 : 17.714 15.346 4.574 4.201 MuHd_100 : 17.071 12.664 4.014 3.286 MuHd_105 : 13.948 8.013 2.879 1.821 Hmax_075 : 1.050 6.800 -2.142 2.880 Hmax_095 : 1.900 12.200 -0.619 4.260 Hmax_100 : 6.500 13.700 0.225 4.560 Hmax_105 : -1.400 8.300 -1.899 3.140 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9837 0.0163 DFMC : 0.9877 0.0123
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 311 EHI_060330 MNDNKQEIPLDLESIIISPSQCYLYGIDGNVQEISNENSIKEICFYSYFPCFIQPICRIDNLKRYLYFFISVTFIITAIE 80 TIWFFISVLFEYEKNSSILIPTANSIKIVGGKNLSLIKCEYQYFRLVLPIFLQNNILQLIVTIIIQLKFGIIVERILGSS 160 WYFIMYIVCGTMSLFGSYLFAYELPFIGCSSSLIGIMTIWVLQMIIQKEKYHPIVWVQLFVSAIFSIFVIIGSCLFTPID 240 NGISFIFSFGTGILFGLTYFGDNFKSCLTNLFFKWANRILPILLYFSLLTLTILAIRFVLPVSCHSTKTVS 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ....................................................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ EHI_060330 5 --MNDNK|QE 0.058 . EHI_060330 41 SNENSIK|EI 0.066 . EHI_060330 58 FIQPICR|ID 0.072 . EHI_060330 63 CRIDNLK|RY 0.058 . EHI_060330 64 RIDNLKR|YL 0.166 . EHI_060330 94 VLFEYEK|NS 0.064 . EHI_060330 107 PTANSIK|IV 0.090 . EHI_060330 112 IKIVGGK|NL 0.067 . EHI_060330 118 KNLSLIK|CE 0.058 . EHI_060330 125 CEYQYFR|LV 0.115 . EHI_060330 148 TIIIQLK|FG 0.073 . EHI_060330 155 FGIIVER|IL 0.094 . EHI_060330 208 LQMIIQK|EK 0.061 . EHI_060330 210 MIIQKEK|YH 0.068 . EHI_060330 265 YFGDNFK|SC 0.071 . EHI_060330 274 LTNLFFK|WA 0.085 . EHI_060330 278 FFKWANR|IL 0.075 . EHI_060330 297 LTILAIR|FV 0.098 . EHI_060330 308 VSCHSTK|TV 0.095 . ____________________________^_________________

  • Fasta :-

    >EHI_060330 ATGAATGATAATAAACAAGAAATACCACTTGATTTAGAATCAATAATTATTTCACCATCT CAATGTTATTTATATGGTATTGATGGGAATGTACAAGAAATATCTAATGAGAATAGCATT AAAGAAATATGTTTTTATTCTTATTTTCCATGTTTTATTCAACCCATTTGTAGAATAGAT AACTTAAAACGATATTTATATTTTTTTATTTCAGTAACATTTATAATAACAGCAATTGAA ACAATATGGTTTTTTATTAGTGTATTGTTTGAATATGAAAAAAATTCTTCTATATTAATT CCAACAGCTAATTCAATTAAAATTGTTGGTGGAAAAAATTTATCATTAATTAAATGTGAG TATCAATACTTTAGATTAGTACTTCCAATTTTTTTACAAAACAATATTCTTCAATTAATT GTTACAATTATTATTCAATTAAAATTTGGAATTATTGTAGAAAGAATATTAGGAAGTTCA TGGTATTTTATTATGTATATAGTTTGTGGAACAATGTCATTATTTGGAAGTTATTTATTT GCTTATGAATTACCATTTATTGGTTGTTCATCTTCTTTAATAGGAATAATGACAATTTGG GTTTTACAAATGATTATTCAAAAAGAGAAATACCATCCAATTGTTTGGGTCCAACTCTTT GTCTCAGCTATTTTTAGTATATTCGTAATTATCGGCAGTTGTTTATTTACACCAATTGAT AACGGAATTTCATTTATATTTTCTTTTGGAACAGGAATATTATTTGGACTAACATATTTC GGTGATAATTTTAAATCTTGCTTAACAAACTTGTTCTTTAAATGGGCAAATAGGATTCTT CCTATTTTATTGTACTTCTCATTACTTACACTTACTATTTTGGCTATTCGTTTTGTTTTA CCAGTATCTTGTCATTCTACTAAAACAGTTTCTTAA
  • Download Fasta

  • Fasta :-

    MNDNKQEIPLDLESIIISPSQCYLYGIDGNVQEISNENSIKEICFYSYFPCFIQPICRID NLKRYLYFFISVTFIITAIETIWFFISVLFEYEKNSSILIPTANSIKIVGGKNLSLIKCE YQYFRLVLPIFLQNNILQLIVTIIIQLKFGIIVERILGSSWYFIMYIVCGTMSLFGSYLF AYELPFIGCSSSLIGIMTIWVLQMIIQKEKYHPIVWVQLFVSAIFSIFVIIGSCLFTPID NGISFIFSFGTGILFGLTYFGDNFKSCLTNLFFKWANRILPILLYFSLLTLTILAIRFVL PVSCHSTKTVS

    No Results
IDSitePositionGscoreIscore
EHI_060330T3090.5260.023
IDSitePositionGscoreIscore
EHI_060330T3090.5260.023
IDSitePeptideScoreMethod
EHI_06033039 SSNENSIKEI0.994unsp

EHI_060330      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India