EHI_086080 | proteasome subunit alpha type 1, putative

_IDPredictionOTHERSPmTPCS_Position
EHI_086080OTHER0.9976470.0001190.002234
No Results

  • Fasta :-

    >EHI_086080 MFRNQYDSDNITWSPQGRLFQIEYATEAVKQGSAVVGVKSKTHAVVATFNRQTDELGAYQ KKIFEIDDHIGVAISGFCADARVITSQMRSECIDYSYVYGTPHPVEKLVKHVSDNAQVNT QKYGLRPYGVGLLVIGYDTKPRLFETSPSGLYYSYKAQAIGARSQSCRTYLEKHFESFKE LDEEQLIKQAILALRESLTTTNDKLSVLNCSVAIVGKDTPFRFITDKELQNQLDNLDTQQ MEMVQAEVD
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/EHI_086080.fa Sequence name : EHI_086080 Sequence length : 249 VALUES OF COMPUTED PARAMETERS Coef20 : 3.745 CoefTot : -0.311 ChDiff : -5 ZoneTo : 6 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.465 1.265 0.137 0.498 MesoH : -1.024 0.044 -0.452 0.123 MuHd_075 : 26.819 14.876 6.227 6.389 MuHd_095 : 23.206 3.210 2.510 4.147 MuHd_100 : 22.800 5.656 3.139 4.062 MuHd_105 : 15.127 7.484 3.280 2.091 Hmax_075 : -1.400 -0.175 -2.530 1.907 Hmax_095 : -0.800 -3.700 -3.348 0.753 Hmax_100 : -0.800 -3.700 -3.348 0.300 Hmax_105 : -4.600 -5.400 -4.207 0.548 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8979 0.1021 DFMC : 0.9229 0.0771
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 249 EHI_086080 MFRNQYDSDNITWSPQGRLFQIEYATEAVKQGSAVVGVKSKTHAVVATFNRQTDELGAYQKKIFEIDDHIGVAISGFCAD 80 ARVITSQMRSECIDYSYVYGTPHPVEKLVKHVSDNAQVNTQKYGLRPYGVGLLVIGYDTKPRLFETSPSGLYYSYKAQAI 160 GARSQSCRTYLEKHFESFKELDEEQLIKQAILALRESLTTTNDKLSVLNCSVAIVGKDTPFRFITDKELQNQLDNLDTQQ 240 MEMVQAEVD 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ......... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ EHI_086080 3 ----MFR|NQ 0.088 . EHI_086080 18 TWSPQGR|LF 0.126 . EHI_086080 30 YATEAVK|QG 0.064 . EHI_086080 39 SAVVGVK|SK 0.081 . EHI_086080 41 VVGVKSK|TH 0.059 . EHI_086080 51 VVATFNR|QT 0.107 . EHI_086080 61 ELGAYQK|KI 0.074 . EHI_086080 62 LGAYQKK|IF 0.109 . EHI_086080 82 GFCADAR|VI 0.107 . EHI_086080 89 VITSQMR|SE 0.092 . EHI_086080 107 TPHPVEK|LV 0.095 . EHI_086080 110 PVEKLVK|HV 0.085 . EHI_086080 122 AQVNTQK|YG 0.058 . EHI_086080 126 TQKYGLR|PY 0.119 . EHI_086080 140 VIGYDTK|PR 0.054 . EHI_086080 142 GYDTKPR|LF 0.099 . EHI_086080 156 GLYYSYK|AQ 0.077 . EHI_086080 163 AQAIGAR|SQ 0.120 . EHI_086080 168 ARSQSCR|TY 0.138 . EHI_086080 173 CRTYLEK|HF 0.064 . EHI_086080 179 KHFESFK|EL 0.071 . EHI_086080 188 DEEQLIK|QA 0.070 . EHI_086080 195 QAILALR|ES 0.074 . EHI_086080 204 LTTTNDK|LS 0.051 . EHI_086080 217 SVAIVGK|DT 0.071 . EHI_086080 222 GKDTPFR|FI 0.163 . EHI_086080 227 FRFITDK|EL 0.075 . ____________________________^_________________

  • Fasta :-

    >EHI_086080 ATGTTCCGTAATCAATATGATTCTGATAATATTACATGGAGTCCTCAAGGAAGGTTATTC CAAATTGAATATGCAACAGAAGCTGTTAAACAAGGTTCTGCTGTTGTTGGTGTCAAATCA AAAACACATGCTGTTGTTGCAACATTTAATAGACAAACTGATGAGTTAGGTGCATACCAA AAGAAAATATTTGAAATTGATGACCATATTGGAGTTGCAATTAGTGGATTTTGTGCTGAT GCACGAGTAATTACAAGTCAAATGAGAAGTGAGTGTATTGATTATTCGTATGTATATGGA ACACCACATCCAGTAGAAAAACTTGTTAAACACGTTTCTGATAATGCACAAGTTAATACT CAAAAGTATGGATTAAGACCATATGGAGTTGGTTTATTGGTTATAGGATATGACACTAAA CCTCGATTATTTGAAACATCACCAAGTGGGCTTTATTATAGTTATAAAGCACAAGCTATT GGAGCACGATCACAATCATGCAGAACATATCTTGAAAAACATTTTGAATCATTTAAAGAG TTAGATGAAGAACAATTAATCAAACAAGCTATTTTAGCATTAAGAGAATCATTAACAACT ACTAATGATAAACTTTCTGTTTTAAATTGTAGTGTAGCAATTGTTGGAAAAGATACTCCA TTTAGATTTATTACAGACAAAGAACTTCAAAACCAATTAGATAATTTAGATACTCAACAA ATGGAAATGGTACAAGCTGAAGTTGATTAA
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  • Fasta :-

    MFRNQYDSDNITWSPQGRLFQIEYATEAVKQGSAVVGVKSKTHAVVATFNRQTDELGAYQ KKIFEIDDHIGVAISGFCADARVITSQMRSECIDYSYVYGTPHPVEKLVKHVSDNAQVNT QKYGLRPYGVGLLVIGYDTKPRLFETSPSGLYYSYKAQAIGARSQSCRTYLEKHFESFKE LDEEQLIKQAILALRESLTTTNDKLSVLNCSVAIVGKDTPFRFITDKELQNQLDNLDTQQ MEMVQAEVD

  • title: active site
  • coordinates: S33,F49,R51,K62,A162
No Results
No Results
IDSitePeptideScoreMethod
EHI_086080177 SKHFESFKEL0.995unsp

EHI_086080      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India