EHI_144040 | cysteine proteinase, pseudogene

_IDPredictionOTHERSPmTPCS_Position
EHI_144040SP0.1417770.8576540.000569CS pos: 13-14. VNG-ID. Pr: 0.8846
No Results

  • Fasta :-

    >EHI_144040 MIVLIYLLSIVNGIDFNTWVGKYNKHFTAVEMLRRNAIFNMNGKIVGEFNKEGTFKLSLE GPFAAMTNEEYKNILKSKRSEEGKGKVKYLNIEAPETVDWRKEGKVTPIRDQAECGGCYA FGSIAALEGRLLVEQGGDANTLDLSEEEMIQCTREYGNNGCGGGFGSNAYDYIIEH*VSN ETEYPFTGMDSECKTNIKPYVTMKGYNRVARNNVKELKSAISQGMVDVAMDASFVKFQLY KSGAYTDKKCKKSFFALNHEVSAVGYGVVDGIECWIIRNSWGTTWGENGYFNIAIEGNTC GIATDPLYPTGAQYL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/EHI_144040.fa Sequence name : EHI_144040 Sequence length : 315 VALUES OF COMPUTED PARAMETERS Coef20 : 4.314 CoefTot : -2.015 ChDiff : -5 ZoneTo : 47 KR : 5 DE : 2 CleavSite : 36 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.894 1.735 0.131 0.649 MesoH : -0.600 0.111 -0.394 0.211 MuHd_075 : 41.489 21.374 11.572 7.942 MuHd_095 : 19.966 17.873 4.940 4.297 MuHd_100 : 23.090 12.773 7.056 5.351 MuHd_105 : 30.328 20.598 9.539 7.235 Hmax_075 : 18.783 16.450 2.731 4.398 Hmax_095 : 4.200 15.750 1.056 3.832 Hmax_100 : 14.800 8.600 -0.993 6.150 Hmax_105 : 10.400 9.400 0.332 5.170 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8589 0.1411 DFMC : 0.9214 0.0786
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 315 EHI_144040 MIVLIYLLSIVNGIDFNTWVGKYNKHFTAVEMLRRNAIFNMNGKIVGEFNKEGTFKLSLEGPFAAMTNEEYKNILKSKRS 80 EEGKGKVKYLNIEAPETVDWRKEGKVTPIRDQAECGGCYAFGSIAALEGRLLVEQGGDANTLDLSEEEMIQCTREYGNNG 160 CGGGFGSNAYDYIIEHXVSNETEYPFTGMDSECKTNIKPYVTMKGYNRVARNNVKELKSAISQGMVDVAMDASFVKFQLY 240 KSGAYTDKKCKKSFFALNHEVSAVGYGVVDGIECWIIRNSWGTTWGENGYFNIAIEGNTCGIATDPLYPTGAQYL 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ........................................................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ EHI_144040 22 FNTWVGK|YN 0.071 . EHI_144040 25 WVGKYNK|HF 0.073 . EHI_144040 34 TAVEMLR|RN 0.078 . EHI_144040 35 AVEMLRR|NA 0.120 . EHI_144040 44 IFNMNGK|IV 0.086 . EHI_144040 51 IVGEFNK|EG 0.061 . EHI_144040 56 NKEGTFK|LS 0.067 . EHI_144040 72 MTNEEYK|NI 0.072 . EHI_144040 76 EYKNILK|SK 0.069 . EHI_144040 78 KNILKSK|RS 0.077 . EHI_144040 79 NILKSKR|SE 0.364 . EHI_144040 84 KRSEEGK|GK 0.094 . EHI_144040 86 SEEGKGK|VK 0.061 . EHI_144040 88 EGKGKVK|YL 0.069 . EHI_144040 101 PETVDWR|KE 0.094 . EHI_144040 102 ETVDWRK|EG 0.064 . EHI_144040 105 DWRKEGK|VT 0.062 . EHI_144040 110 GKVTPIR|DQ 0.101 . EHI_144040 130 IAALEGR|LL 0.096 . EHI_144040 154 EMIQCTR|EY 0.094 . EHI_144040 194 GMDSECK|TN 0.060 . EHI_144040 198 ECKTNIK|PY 0.058 . EHI_144040 204 KPYVTMK|GY 0.079 . EHI_144040 208 TMKGYNR|VA 0.088 . EHI_144040 211 GYNRVAR|NN 0.426 . EHI_144040 215 VARNNVK|EL 0.068 . EHI_144040 218 NNVKELK|SA 0.103 . EHI_144040 236 MDASFVK|FQ 0.062 . EHI_144040 241 VKFQLYK|SG 0.068 . EHI_144040 248 SGAYTDK|KC 0.072 . EHI_144040 249 GAYTDKK|CK 0.081 . EHI_144040 251 YTDKKCK|KS 0.068 . EHI_144040 252 TDKKCKK|SF 0.216 . EHI_144040 278 IECWIIR|NS 0.082 . ____________________________^_________________

  • Fasta :-

    >EHI_144040 ATGATTGTATTGATTTATTTGTTAAGTATTGTAAATGGGATTGATTTCAATACATGGGTT GGAAAATATAATAAACATTTTACAGCAGTTGAAATGCTTAGAAGAAATGCAATTTTCAAT ATGAATGGTAAAATTGTAGGAGAATTTAACAAAGAAGGAACATTTAAATTATCATTAGAG GGACCATTTGCTGCTATGACGAATGAAGAATATAAAAATATTCTTAAATCAAAAAGAAGT GAAGAAGGAAAAGGAAAAGTTAAGTATTTGAATATTGAAGCACCTGAAACAGTAGATTGG AGAAAAGAAGGAAAAGTAACACCAATTAGAGATCAAGCAGAGTGTGGAGGGTGTTATGCA TTTGGATCAATTGCAGCACTTGAAGGAAGATTATTAGTAGAACAAGGAGGTGATGCTAAT ACACTCGATCTTTCAGAAGAAGAAATGATTCAATGTACAAGAGAATATGGAAATAATGGA TGTGGAGGAGGATTTGGATCAAACGCATATGATTACATTATAGAACATTGAGTTAGTAAT GAAACAGAATATCCATTTACTGGAATGGATTCTGAATGTAAAACTAATATAAAACCATAT GTTACAATGAAAGGCTACAATAGAGTCGCAAGAAATAATGTAAAAGAACTTAAATCTGCA ATTTCACAAGGAATGGTTGATGTTGCAATGGATGCATCATTTGTGAAATTCCAATTATAT AAAAGTGGAGCATATACAGATAAAAAGTGTAAGAAGAGTTTCTTTGCATTAAATCACGAA GTATCAGCAGTTGGGTATGGAGTTGTTGATGGAATAGAATGTTGGATAATTAGAAATTCA TGGGGAACAACATGGGGAGAGAATGGGTATTTTAATATTGCTATTGAAGGAAATACTTGT GGTATTGCTACTGATCCACTTTATCCAACAGGTGCACAATATCTTTAA
  • Download Fasta

  • Fasta :-

    MIVLIYLLSIVNGIDFNTWVGKYNKHFTAVEMLRRNAIFNMNGKIVGEFNKEGTFKLSLE GPFAAMTNEEYKNILKSKRSEEGKGKVKYLNIEAPETVDWRKEGKVTPIRDQAECGGCYA FGSIAALEGRLLVEQGGDANTLDLSEEEMIQCTREYGNNGCGGGFGSNAYDYIIEH

  • title: active site
  • coordinates: Q112,C118,H259,N279
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EHI_144040      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India