EHI_174670 | proteasome subunit beta type 1, putative

_IDPredictionOTHERSPmTPCS_Position
EHI_174670OTHER0.9997750.0000890.000136
No Results

  • Fasta :-

    >EHI_174670 MGKNKMFTQQPVREAKNKDQWSPYEDNCGTCVVIKGEDFVVIASDTRMSRDYMILTRNDS KIYPLTSKCVFTGSGMRADIKELTDQIKAHIKNYKYENGKEMSTESVAQVLSNTLYSHRF FPYYSFSLLAGINSKGKAVTYNYDAVGSFEERKYSCSGSGEELAYPLLDSLLKDRTEPLG EQEAINIARDVMTSACERDIHTGDNVEIVILNSNGIRKEVHFMASD
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/EHI_174670.fa Sequence name : EHI_174670 Sequence length : 226 VALUES OF COMPUTED PARAMETERS Coef20 : 3.184 CoefTot : -1.038 ChDiff : -4 ZoneTo : 13 KR : 3 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.588 1.306 0.089 0.423 MesoH : -0.919 -0.152 -0.479 0.095 MuHd_075 : 37.242 19.711 9.206 7.607 MuHd_095 : 21.322 12.641 6.094 4.549 MuHd_100 : 21.997 12.753 5.920 4.467 MuHd_105 : 20.344 11.527 5.447 4.314 Hmax_075 : 0.262 1.225 -3.373 1.662 Hmax_095 : -4.700 -0.900 -4.103 0.710 Hmax_100 : -3.900 -1.800 -4.394 0.250 Hmax_105 : -3.100 -0.600 -3.609 0.440 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9434 0.0566 DFMC : 0.9470 0.0530
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 226 EHI_174670 MGKNKMFTQQPVREAKNKDQWSPYEDNCGTCVVIKGEDFVVIASDTRMSRDYMILTRNDSKIYPLTSKCVFTGSGMRADI 80 KELTDQIKAHIKNYKYENGKEMSTESVAQVLSNTLYSHRFFPYYSFSLLAGINSKGKAVTYNYDAVGSFEERKYSCSGSG 160 EELAYPLLDSLLKDRTEPLGEQEAINIARDVMTSACERDIHTGDNVEIVILNSNGIRKEVHFMASD 240 ................................................................................ 80 ................................................................................ 160 .................................................................. 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ EHI_174670 3 ----MGK|NK 0.058 . EHI_174670 5 --MGKNK|MF 0.079 . EHI_174670 13 FTQQPVR|EA 0.088 . EHI_174670 16 QPVREAK|NK 0.189 . EHI_174670 18 VREAKNK|DQ 0.076 . EHI_174670 35 GTCVVIK|GE 0.069 . EHI_174670 47 VIASDTR|MS 0.080 . EHI_174670 50 SDTRMSR|DY 0.260 . EHI_174670 57 DYMILTR|ND 0.089 . EHI_174670 61 LTRNDSK|IY 0.056 . EHI_174670 68 IYPLTSK|CV 0.074 . EHI_174670 77 FTGSGMR|AD 0.083 . EHI_174670 81 GMRADIK|EL 0.076 . EHI_174670 88 ELTDQIK|AH 0.063 . EHI_174670 92 QIKAHIK|NY 0.061 . EHI_174670 95 AHIKNYK|YE 0.081 . EHI_174670 100 YKYENGK|EM 0.065 . EHI_174670 119 NTLYSHR|FF 0.077 . EHI_174670 135 LAGINSK|GK 0.059 . EHI_174670 137 GINSKGK|AV 0.093 . EHI_174670 152 VGSFEER|KY 0.108 . EHI_174670 153 GSFEERK|YS 0.099 . EHI_174670 173 LLDSLLK|DR 0.060 . EHI_174670 175 DSLLKDR|TE 0.073 . EHI_174670 189 EAINIAR|DV 0.201 . EHI_174670 198 MTSACER|DI 0.185 . EHI_174670 217 LNSNGIR|KE 0.079 . EHI_174670 218 NSNGIRK|EV 0.126 . ____________________________^_________________

  • Fasta :-

    >EHI_174670 ATGGGAAAGAATAAAATGTTTACACAACAACCAGTAAGAGAAGCTAAGAATAAAGACCAA TGGAGTCCATATGAAGATAATTGTGGAACATGTGTTGTTATAAAAGGAGAAGATTTTGTT GTGATTGCTAGTGACACACGTATGAGTAGAGATTATATGATATTGACAAGAAATGACTCT AAAATATATCCACTAACATCTAAATGTGTTTTTACTGGAAGTGGAATGAGAGCAGATATA AAAGAATTAACTGATCAAATCAAAGCACACATCAAGAATTATAAATATGAAAATGGTAAA GAAATGTCAACAGAGTCAGTAGCACAAGTATTATCAAATACATTATATTCACATCGATTC TTCCCATATTATTCATTTTCCTTGTTAGCTGGAATTAACAGTAAAGGGAAAGCAGTTACA TATAATTATGATGCTGTTGGATCATTTGAAGAAAGAAAATATTCATGTAGTGGTAGTGGT GAAGAATTAGCATATCCATTACTTGATTCATTATTAAAAGATAGAACAGAACCATTAGGA GAGCAAGAAGCAATAAACATTGCAAGAGATGTGATGACTTCTGCTTGTGAAAGAGACATA CATACTGGAGATAATGTTGAAATAGTAATTCTTAATTCCAATGGAATAAGAAAAGAAGTA CATTTTATGGCTAGTGACTAA
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  • Fasta :-

    MGKNKMFTQQPVREAKNKDQWSPYEDNCGTCVVIKGEDFVVIASDTRMSRDYMILTRNDS KIYPLTSKCVFTGSGMRADIKELTDQIKAHIKNYKYENGKEMSTESVAQVLSNTLYSHRF FPYYSFSLLAGINSKGKAVTYNYDAVGSFEERKYSCSGSGEELAYPLLDSLLKDRTEPLG EQEAINIARDVMTSACERDIHTGDNVEIVILNSNGIRKEVHFMASD

  • title: active site
  • coordinates: G29,D45,R47,K61,S159,D199,T202,G203
No Results
No Results
IDSitePeptideScoreMethod
EHI_174670159 SSCSGSGEEL0.99unsp

EHI_174670      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India