EHI_179400 | nuclear pore protein, putative

UniProt_ID: C4M9Y0

Computed_GO_Component_IDs: GO:0005643
Computed_GO_Components: nuclear pore
Computed_GO_Function_IDs: GO:0017056
Computed_GO_Functions: structural constituent of nuclear pore
Computed_GO_Process_IDs: GO:0006913 GO:0006810
Computed_GO_Processes: nucleocytoplasmic transport transport
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	EHI_179400	OTHER	0.997381	0.000213	0.002407

No Results

Fasta :-
>EHI_179400 MQNLNQNTSLTSGTNSSIPSLSTNAFLSLNSNGGFGSSTNLFSTSLNNGFGTNTTTGLGS TNSLFSNTLNTGFGNSTTGNNNTVLLNPLSISSLSIGTNVSKDKQNKEKSWVYHDQTSMN QPDFVRPEEMMFNTSCCIIDPKVIDKILFDAEREIESLQPNVSYDIKPIGLKQGYVCNPS MQTLKAMSIEQLKDVSSFEVSRPGYGKVMWSKVDLTNVNLDISIIIERGYCDVYPDGIQK PRFGEKLNKEATIVLENVVDTVEEFRKLLPRLSKKVDIKSYEENTKTVTFVVPHFTRYSV IDEDNNTQENEKEEGIDYEKSQIIPNNNPEWKFPVVVLHKIEYSPFEIDI
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/EHI_179400.fa Sequence name : EHI_179400 Sequence length : 350 VALUES OF COMPUTED PARAMETERS Coef20 : 3.878 CoefTot : -2.408 ChDiff : -11 ZoneTo : 102 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.024 1.159 0.062 0.451 MesoH : 0.443 -0.001 -0.226 0.198 MuHd_075 : 22.780 20.335 7.594 6.101 MuHd_095 : 22.538 18.558 7.531 5.357 MuHd_100 : 19.849 17.593 6.795 4.970 MuHd_105 : 17.922 15.861 5.560 4.324 Hmax_075 : 15.050 16.100 1.945 4.410 Hmax_095 : 14.000 11.200 1.755 4.751 Hmax_100 : 15.700 18.900 3.602 6.100 Hmax_105 : 15.050 9.683 1.661 3.792 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8349 0.1651 DFMC : 0.4877 0.5123 This protein is probably imported in chloroplast. f(Ser) = 0.2059 f(Arg) = 0.0000 CMi = 2.94118 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 350 EHI_179400 MQNLNQNTSLTSGTNSSIPSLSTNAFLSLNSNGGFGSSTNLFSTSLNNGFGTNTTTGLGSTNSLFSNTLNTGFGNSTTGN 80 NNTVLLNPLSISSLSIGTNVSKDKQNKEKSWVYHDQTSMNQPDFVRPEEMMFNTSCCIIDPKVIDKILFDAEREIESLQP 160 NVSYDIKPIGLKQGYVCNPSMQTLKAMSIEQLKDVSSFEVSRPGYGKVMWSKVDLTNVNLDISIIIERGYCDVYPDGIQK 240 PRFGEKLNKEATIVLENVVDTVEEFRKLLPRLSKKVDIKSYEENTKTVTFVVPHFTRYSVIDEDNNTQENEKEEGIDYEK 320 SQIIPNNNPEWKFPVVVLHKIEYSPFEIDI 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .............................. 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ EHI_179400 102 IGTNVSK|DK 0.074 . EHI_179400 104 TNVSKDK|QN 0.068 . EHI_179400 107 SKDKQNK|EK 0.081 . EHI_179400 109 DKQNKEK|SW 0.100 . EHI_179400 126 NQPDFVR|PE 0.089 . EHI_179400 142 CCIIDPK|VI 0.075 . EHI_179400 146 DPKVIDK|IL 0.080 . EHI_179400 153 ILFDAER|EI 0.097 . EHI_179400 167 NVSYDIK|PI 0.082 . EHI_179400 172 IKPIGLK|QG 0.059 . EHI_179400 185 PSMQTLK|AM 0.065 . EHI_179400 193 MSIEQLK|DV 0.104 . EHI_179400 202 SSFEVSR|PG 0.093 . EHI_179400 207 SRPGYGK|VM 0.064 . EHI_179400 212 GKVMWSK|VD 0.058 . EHI_179400 228 ISIIIER|GY 0.111 . EHI_179400 240 YPDGIQK|PR 0.057 . EHI_179400 242 DGIQKPR|FG 0.107 . EHI_179400 246 KPRFGEK|LN 0.067 . EHI_179400 249 FGEKLNK|EA 0.076 . EHI_179400 266 DTVEEFR|KL 0.072 . EHI_179400 267 TVEEFRK|LL 0.068 . EHI_179400 271 FRKLLPR|LS 0.088 . EHI_179400 274 LLPRLSK|KV 0.157 . EHI_179400 275 LPRLSKK|VD 0.111 . EHI_179400 279 SKKVDIK|SY 0.110 . EHI_179400 286 SYEENTK|TV 0.080 . EHI_179400 297 VVPHFTR|YS 0.087 . EHI_179400 312 NTQENEK|EE 0.059 . EHI_179400 320 EGIDYEK|SQ 0.062 . EHI_179400 332 NNNPEWK|FP 0.079 . EHI_179400 340 PVVVLHK|IE 0.053 . ____________________________^_________________

Fasta :-
>EHI_179400 ATGCAAAACTTAAATCAAAATACCTCTTTAACATCTGGAACAAATAGCAGTATACCTAGT CTTTCAACTAATGCATTTCTTTCATTAAACTCAAATGGAGGATTTGGAAGTTCTACTAAC CTTTTTTCCACTTCACTTAATAATGGATTTGGAACAAATACAACAACAGGACTTGGAAGT ACTAATAGTCTTTTCTCAAACACACTTAATACTGGATTTGGAAATTCAACAACAGGAAAT AATAACACAGTGTTATTAAACCCTCTTTCTATTTCATCATTATCAATTGGAACTAACGTT TCAAAAGACAAACAAAATAAAGAAAAGTCATGGGTATATCATGACCAAACATCAATGAAT CAACCAGATTTTGTAAGACCAGAAGAAATGATGTTTAATACATCATGTTGTATAATTGAT CCAAAAGTTATTGACAAAATATTATTTGATGCTGAAAGAGAAATTGAGTCATTACAACCA AATGTTTCATATGACATTAAACCAATAGGATTAAAACAAGGATATGTATGTAATCCTTCA ATGCAAACATTAAAAGCTATGTCAATTGAACAACTTAAAGATGTTTCTTCATTTGAAGTT TCAAGACCAGGTTATGGTAAAGTTATGTGGTCAAAAGTTGATTTAACAAATGTTAATTTA GATATATCTATTATTATAGAACGAGGATATTGTGATGTTTATCCAGATGGAATTCAAAAA CCTCGATTTGGAGAGAAATTAAATAAAGAAGCTACTATTGTTTTAGAGAATGTCGTTGAT ACAGTAGAAGAATTTAGAAAACTTCTTCCTCGTTTAAGTAAGAAAGTAGATATTAAAAGT TATGAAGAAAATACTAAAACTGTTACTTTTGTTGTTCCTCATTTTACACGATATTCTGTT ATTGATGAAGATAATAACACACAAGAGAATGAAAAAGAAGAAGGTATTGATTATGAAAAG AGTCAGATTATACCAAACAATAATCCTGAGTGGAAGTTTCCTGTAGTTGTTCTTCATAAG ATTGAATACAGTCCATTTGAGATTGATATATAA
Download Fasta

Fasta :-

MQNLNQNTSLTSGTNSSIPSLSTNAFLSLNSNGGFGSSTNLFSTSLNNGFGTNTTTGLGS TNSLFSNTLNTGFGNSTTGNNNTVLLNPLSISSLSIGTNVSKDKQNKEKSWVYHDQTSMN QPDFVRPEEMMFNTSCCIIDPKVIDKILFDAEREIESLQPNVSYDIKPIGLKQGYVCNPS MQTLKAMSIEQLKDVSSFEVSRPGYGKVMWSKVDLTNVNLDISIIIERGYCDVYPDGIQK PRFGEKLNKEATIVLENVVDTVEEFRKLLPRLSKKVDIKSYEENTKTVTFVVPHFTRYSV IDEDNNTQENEKEEGIDYEKSQIIPNNNPEWKFPVVVLHKIEYSPFEIDI

No Results

	ID	Site	Position	Gscore	Iscore
	EHI_179400	T	8	0.507	0.026

	ID	Site	Position	Gscore	Iscore
	EHI_179400	T	8	0.507	0.026

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	EHI_179400	299 S	FTRYSVIDE	0.994	unsp	EHI_179400	299 S	FTRYSVIDE	0.994	unsp	EHI_179400	299 S	FTRYSVIDE	0.994	unsp	EHI_179400	188 S	LKAMSIEQL	0.995	unsp	EHI_179400	280 S	VDIKSYEEN	0.997	unsp

EHI_179400 | nuclear pore protein, putative

ID's

UniProt_ID: C4M9Y0

GEO Functions

Computed_GO_Component_IDs: GO:0005643

Computed_GO_Components: nuclear pore

Computed_GO_Function_IDs: GO:0017056

Computed_GO_Functions: structural constituent of nuclear pore

Computed_GO_Process_IDs: GO:0006913 GO:0006810

Computed_GO_Processes: nucleocytoplasmic transport transport

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

EHI_179400

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India