ETH_00008785 | proteasome subunit alpha type 1, putative

UniProt_ID:

Computed_GO_Component_IDs: GO:0005839 GO:0019773
Computed_GO_Components: proteasome core complex proteasome core complex, alpha-subunit complex
Computed_GO_Function_IDs: GO:0004175 GO:0004298
Computed_GO_Functions: endopeptidase activity threonine-type endopeptidase activity
Computed_GO_Process_IDs: GO:0051603 GO:0006511
Computed_GO_Processes: proteolysis involved in cellular protein catabolic process ubiquitin-dependent protein catabolic process
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	ETH_00008785	OTHER	0.999782	0.000140	0.000078

No Results

Fasta :-
>ETH_00008785 MYRNLYDTDCITWSPQGRVFQVEYAKQAVTQGTCCVGLRSDSYVVLCSLKKSPSKLAGYQ QKLFCIDEHVGVAISGITADAKVLCEIMRNACLQHKFTYDTEKPAARLALLVADKCQSNT QRSGKRPYGVGLLIAACDASGPRLFQNCPSGNYYEYNAVAFGARSQASKTYLEKHFETFP TGKLKTVNPSSLDDLLLHGAKALKASMAADTELTAECLCVGIVGRGQPWRELNHEELQTL VDRLTNAESSGDGGSMAVDMPE
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/ETH_00008785.fa Sequence name : ETH_00008785 Sequence length : 262 VALUES OF COMPUTED PARAMETERS Coef20 : 3.877 CoefTot : -0.191 ChDiff : 0 ZoneTo : 6 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.565 1.335 0.220 0.525 MesoH : -0.693 0.339 -0.304 0.142 MuHd_075 : 31.865 19.464 9.225 7.082 MuHd_095 : 25.976 6.637 3.085 5.428 MuHd_100 : 22.592 6.221 2.299 4.685 MuHd_105 : 13.052 7.542 1.582 2.351 Hmax_075 : 12.133 11.433 3.149 4.445 Hmax_095 : 0.438 0.700 -1.072 2.573 Hmax_100 : 6.700 3.700 -0.875 2.380 Hmax_105 : -1.500 -2.100 -2.547 1.120 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7369 0.2631 DFMC : 0.8352 0.1648

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 262 ETH_00008785 MYRNLYDTDCITWSPQGRVFQVEYAKQAVTQGTCCVGLRSDSYVVLCSLKKSPSKLAGYQQKLFCIDEHVGVAISGITAD 80 AKVLCEIMRNACLQHKFTYDTEKPAARLALLVADKCQSNTQRSGKRPYGVGLLIAACDASGPRLFQNCPSGNYYEYNAVA 160 FGARSQASKTYLEKHFETFPTGKLKTVNPSSLDDLLLHGAKALKASMAADTELTAECLCVGIVGRGQPWRELNHEELQTL 240 VDRLTNAESSGDGGSMAVDMPE 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ...................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ ETH_00008785 3 ----MYR|NL 0.088 . ETH_00008785 18 TWSPQGR|VF 0.106 . ETH_00008785 26 FQVEYAK|QA 0.073 . ETH_00008785 39 TCCVGLR|SD 0.132 . ETH_00008785 50 VVLCSLK|KS 0.056 . ETH_00008785 51 VLCSLKK|SP 0.109 . ETH_00008785 55 LKKSPSK|LA 0.082 . ETH_00008785 62 LAGYQQK|LF 0.075 . ETH_00008785 82 GITADAK|VL 0.067 . ETH_00008785 89 VLCEIMR|NA 0.093 . ETH_00008785 96 NACLQHK|FT 0.073 . ETH_00008785 103 FTYDTEK|PA 0.062 . ETH_00008785 107 TEKPAAR|LA 0.087 . ETH_00008785 115 ALLVADK|CQ 0.062 . ETH_00008785 122 CQSNTQR|SG 0.121 . ETH_00008785 125 NTQRSGK|RP 0.129 . ETH_00008785 126 TQRSGKR|PY 0.264 . ETH_00008785 143 CDASGPR|LF 0.076 . ETH_00008785 164 AVAFGAR|SQ 0.107 . ETH_00008785 169 ARSQASK|TY 0.076 . ETH_00008785 174 SKTYLEK|HF 0.070 . ETH_00008785 183 ETFPTGK|LK 0.060 . ETH_00008785 185 FPTGKLK|TV 0.076 . ETH_00008785 201 LLLHGAK|AL 0.065 . ETH_00008785 204 HGAKALK|AS 0.067 . ETH_00008785 225 CVGIVGR|GQ 0.086 . ETH_00008785 230 GRGQPWR|EL 0.157 . ETH_00008785 243 LQTLVDR|LT 0.078 . ____________________________^_________________

Fasta :-
>ETH_00008785 ATGTACCGCAATCTCTACGACACCGACTGCATCACCTGGTCCCCCCAGGGTCGAGTGTTT CAAGTTGAATATGCAAAGCAGGCGGTTACTCAGGGGACTTGCTGCGTGGGGCTGCGGTCG GACTCCTACGTGGTGCTCTGTTCCTTGAAAAAGAGCCCCTCGAAACTTGCTGGGTACCAG CAGAAGCTCTTCTGCATCGATGAACATGTTGGAGTTGCAATCTCAGGCATTACCGCTGAC GCCAAGGTCCTATGCGAAATTATGAGGAACGCCTGCCTCCAGCACAAATTTACTTATGAC ACAGAGAAGCCAGCGGCAAGGCTTGCGTTGCTTGTGGCTGACAAGTGCCAAAGCAACACC CAGCGCAGCGGCAAAAGGCCCTACGGCGTGGGGCTTTTGATTGCTGCATGCGATGCTTCG GGGCCGCGGCTGTTTCAGAATTGCCCCTCGGGAAACTATTACGAATACAACGCCGTTGCC TTCGGCGCGAGGTCCCAAGCTTCAAAGACATACCTCGAGAAACACTTCGAGACTTTTCCC ACCGGCAAGTTAAAAACCGTAAACCCTTCTTCGCTGGATGACCTGCTCCTGCATGGCGCG AAGGCCCTAAAGGCGTCTATGGCCGCGGACACCGAGCTGACAGCTGAGTGTCTGTGCGTC GGGATTGTCGGCCGCGGGCAGCCTTGGCGCGAGCTCAACCATGAGGAGCTGCAAACCCTC GTGGATCGTCTCACGAACGCTGAATCTAGCGGCGACGGCGGTTCTATGGCTGTGGATATG CCGGAGTAA
Download Fasta

Fasta :-

MYRNLYDTDCITWSPQGRVFQVEYAKQAVTQGTCCVGLRSDSYVVLCSLKKSPSKLAGYQ QKLFCIDEHVGVAISGITADAKVLCEIMRNACLQHKFTYDTEKPAARLALLVADKCQSNT QRSGKRPYGVGLLIAACDASGPRLFQNCPSGNYYEYNAVAFGARSQASKTYLEKHFETFP TGKLKTVNPSSLDDLLLHGAKALKASMAADTELTAECLCVGIVGRGQPWRELNHEELQTL VDRLTNAESSGDGGSMAVDMPE

Proteasome subunits

title: active site
coordinates: T33,L49,K51,K62,A163

No Results

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	ETH_00008785	123 S	NTQRSGKRP	0.996	unsp	ETH_00008785	191 S	VNPSSLDDL	0.992	unsp

ETH_00008785 | proteasome subunit alpha type 1, putative

ID's

UniProt_ID:

GEO Functions

Computed_GO_Component_IDs: GO:0005839 GO:0019773

Computed_GO_Components: proteasome core complex proteasome core complex, alpha-subunit complex

Computed_GO_Function_IDs: GO:0004175 GO:0004298

Computed_GO_Functions: endopeptidase activity threonine-type endopeptidase activity

Computed_GO_Process_IDs: GO:0051603 GO:0006511

Computed_GO_Processes: proteolysis involved in cellular protein catabolic process ubiquitin-dependent protein catabolic process

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Proteasome subunits

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India