ETH_00024440 | 26S proteasome non-ATPase regulatory subunit 4, putative

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_IDPredictionOTHERSPmTPCS_Position
ETH_00024440OTHER0.9933350.0020590.004605
No Results

  • Fasta :-

    >ETH_00024440 MLRGDFGALVERVARRALRCLYTSDLCAFSFLIFFSFLFFNSFFQLALKHRINKTQRQRI LLFVGSPVVASEKQLVQLGRQLKKNNIALDIVCLANVEENRAKLTAMHAAVNSNDTSRFV EYPAGSSSLLSDVMVSAMLLHDPEAAAAAAAAGGDSAVNEFGVDPNVDPDLYMVLRMSLE EARQQQQQQQGAAAGAAAATAPAGQPAAAAGSAELPPGAAQIEGLEDMDEELRQAVLLSL QDYCGDASSTEATQQQQQQQQQEQQQGEGQESQGAANGAGAAAAAETEAAAAAAPNNANE QPPGDAAEKEPKGSS
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/ETH_00024440.fa Sequence name : ETH_00024440 Sequence length : 315 VALUES OF COMPUTED PARAMETERS Coef20 : 4.836 CoefTot : 0.007 ChDiff : -16 ZoneTo : 4 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.388 1.994 0.327 0.806 MesoH : -0.507 0.579 -0.346 0.220 MuHd_075 : 24.990 14.037 6.931 5.430 MuHd_095 : 39.956 27.954 9.263 9.787 MuHd_100 : 29.370 19.699 7.383 6.681 MuHd_105 : 26.497 11.487 6.303 5.299 Hmax_075 : 14.467 17.500 3.105 5.857 Hmax_095 : 17.938 22.925 3.738 6.948 Hmax_100 : 3.800 16.100 0.633 3.720 Hmax_105 : 3.200 9.900 -0.186 3.660 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1148 0.8852 DFMC : 0.3057 0.6943 This protein is probably imported in mitochondria. f(Ser) = 0.0000 f(Arg) = 0.2500 CMi = 0.00000 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 315 ETH_00024440 MLRGDFGALVERVARRALRCLYTSDLCAFSFLIFFSFLFFNSFFQLALKHRINKTQRQRILLFVGSPVVASEKQLVQLGR 80 QLKKNNIALDIVCLANVEENRAKLTAMHAAVNSNDTSRFVEYPAGSSSLLSDVMVSAMLLHDPEAAAAAAAAGGDSAVNE 160 FGVDPNVDPDLYMVLRMSLEEARQQQQQQQGAAAGAAAATAPAGQPAAAAGSAELPPGAAQIEGLEDMDEELRQAVLLSL 240 QDYCGDASSTEATQQQQQQQQQEQQQGEGQESQGAANGAGAAAAAETEAAAAAAPNNANEQPPGDAAEKEPKGSS 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ........................................................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ ETH_00024440 3 ----MLR|GD 0.094 . ETH_00024440 12 FGALVER|VA 0.099 . ETH_00024440 15 LVERVAR|RA 0.238 . ETH_00024440 16 VERVARR|AL 0.150 . ETH_00024440 19 VARRALR|CL 0.264 . ETH_00024440 49 FFQLALK|HR 0.055 . ETH_00024440 51 QLALKHR|IN 0.109 . ETH_00024440 54 LKHRINK|TQ 0.125 . ETH_00024440 57 RINKTQR|QR 0.087 . ETH_00024440 59 NKTQRQR|IL 0.078 . ETH_00024440 73 PVVASEK|QL 0.065 . ETH_00024440 80 QLVQLGR|QL 0.101 . ETH_00024440 83 QLGRQLK|KN 0.139 . ETH_00024440 84 LGRQLKK|NN 0.088 . ETH_00024440 101 ANVEENR|AK 0.089 . ETH_00024440 103 VEENRAK|LT 0.062 . ETH_00024440 118 NSNDTSR|FV 0.167 . ETH_00024440 176 DLYMVLR|MS 0.085 . ETH_00024440 183 MSLEEAR|QQ 0.105 . ETH_00024440 233 DMDEELR|QA 0.063 . ETH_00024440 309 PGDAAEK|EP 0.053 . ETH_00024440 312 AAEKEPK|GS 0.076 . ____________________________^_________________

  • Fasta :-

    >ETH_00024440 ATGTTGCGTGGCGACTTCGGGGCTCTTGTGGAGCGCGTTGCGCGCCGCGCGCTGAGGTGT CTGTACACCTCGGACCTGTGCGCGTTCTCGTTTTTGATTTTCTTTTCATTCCTTTTTTTT AATTCTTTTTTTCAGCTCGCGCTGAAACACAGAATCAACAAGACGCAGCGGCAGCGGATT CTGCTCTTCGTGGGGAGTCCAGTGGTGGCAAGTGAGAAGCAGTTGGTGCAGCTGGGACGT CAGCTGAAGAAGAACAACATAGCTTTGGATATTGTGTGTCTCGCGAATGTGGAGGAGAAC AGAGCCAAGTTGACGGCGATGCATGCAGCAGTCAACAGCAACGACACAAGCCGCTTCGTG GAATATCCCGCGGGCAGCAGCAGCTTGTTGAGCGATGTAATGGTGTCTGCCATGCTGCTG CACGACCCCGAAGCAGCAGCAGCAGCAGCAGCAGCAGGAGGCGACAGCGCTGTGAACGAA TTCGGAGTTGACCCCAATGTAGACCCAGACCTTTATATGGTGCTGCGCATGTCTTTGGAG GAGGCGCGGCAGCAGCAGCAGCAGCAGCAGGGAGCAGCAGCAGGAGCAGCAGCAGCAACC GCCCCAGCGGGACAGCCCGCAGCCGCCGCAGGCAGCGCCGAACTGCCCCCCGGAGCAGCA CAAATCGAAGGCCTCGAAGACATGGACGAAGAGCTGCGGCAGGCCGTGCTGCTATCGCTG CAGGACTACTGCGGGGACGCCAGCAGCACGGAGGCCACCCAGCAGCAGCAGCAGCAGCAG CAGCAGGAGCAGCAGCAGGGGGAGGGGCAGGAGAGCCAGGGCGCAGCGAACGGGGCTGGT GCTGCTGCTGCAGCAGAAACAGAAGCTGCAGCAGCAGCAGCACCCAACAACGCGAACGAA CAGCCCCCAGGGGACGCAGCGGAAAAAGAGCCCAAGGGCAGCAGCTGA
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  • Fasta :-

    MLRGDFGALVERVARRALRCLYTSDLCAFSFLIFFSFLFFNSFFQLALKHRINKTQRQRI LLFVGSPVVASEKQLVQLGRQLKKNNIALDIVCLANVEENRAKLTAMHAAVNSNDTSRFV EYPAGSSSLLSDVMVSAMLLHDPEAAAAAAAAGGDSAVNEFGVDPNVDPDLYMVLRMSLE EARQQQQQQQGAAAGAAAATAPAGQPAAAAGSAELPPGAAQIEGLEDMDEELRQAVLLSL QDYCGDASSTEATQQQQQQQQQEQQQGEGQESQGAANGAGAAAAAETEAAAAAAPNNANE QPPGDAAEKEPKGSS

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IDSitePeptideScoreMethod
ETH_00024440178 SVLRMSLEEA0.998unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India