ETH_00031610 | Reverse transcriptase, related

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_IDPredictionOTHERSPmTPCS_Position
ETH_00031610OTHER0.9991460.0005090.000345
No Results

  • Fasta :-

    >ETH_00031610 MMCAVATGPNAIPVSLEWGNQLLSTAEGTSMSDGHAEGTQPLSETRWESGSAWVLSEKAP EATTDSSRMPAEATEDGYRSDATEIVLHWWRENCTKESYDKGGALCCVGATAVLRVELAG SPCEALLDIGASTSFISPKTVERLQLRVRRLPEEHRFTVATSEQLRIDRVVKGLTMWCGH SDKLRTYVNGQWCELPVVRTGEAKPHGDSPTVVHPRAPSEQAYEILAKQVADMSAEEAAI FVCAPPRRYKSHAKTQAKARITSLVRQAAADTKNLSAPLYGLHFILALPEAASAVPLRFS DEWQGALCCALIGNQPTSSGWGSPLPSTASPAAESDEESPWPMAKLEHTLFDEWINSTEA QHIPCEIAQVLHEYRAVFPDNLPKGLITAPKRLS
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/ETH_00031610.fa Sequence name : ETH_00031610 Sequence length : 394 VALUES OF COMPUTED PARAMETERS Coef20 : 3.720 CoefTot : -0.233 ChDiff : -12 ZoneTo : 16 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.000 1.571 0.221 0.595 MesoH : -0.048 0.257 -0.247 0.248 MuHd_075 : 5.168 7.710 1.089 0.693 MuHd_095 : 13.119 9.961 5.215 2.601 MuHd_100 : 18.320 12.126 4.346 3.718 MuHd_105 : 20.052 12.059 4.021 4.194 Hmax_075 : 9.683 10.300 1.278 4.515 Hmax_095 : 15.100 15.000 3.269 5.460 Hmax_100 : 16.100 15.000 2.759 5.480 Hmax_105 : 15.517 17.033 2.645 5.810 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9913 0.0087 DFMC : 0.9924 0.0076
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 394 ETH_00031610 MMCAVATGPNAIPVSLEWGNQLLSTAEGTSMSDGHAEGTQPLSETRWESGSAWVLSEKAPEATTDSSRMPAEATEDGYRS 80 DATEIVLHWWRENCTKESYDKGGALCCVGATAVLRVELAGSPCEALLDIGASTSFISPKTVERLQLRVRRLPEEHRFTVA 160 TSEQLRIDRVVKGLTMWCGHSDKLRTYVNGQWCELPVVRTGEAKPHGDSPTVVHPRAPSEQAYEILAKQVADMSAEEAAI 240 FVCAPPRRYKSHAKTQAKARITSLVRQAAADTKNLSAPLYGLHFILALPEAASAVPLRFSDEWQGALCCALIGNQPTSSG 320 WGSPLPSTASPAAESDEESPWPMAKLEHTLFDEWINSTEAQHIPCEIAQVLHEYRAVFPDNLPKGLITAPKRLS 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .......................................................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ ETH_00031610 46 QPLSETR|WE 0.086 . ETH_00031610 58 AWVLSEK|AP 0.065 . ETH_00031610 68 ATTDSSR|MP 0.082 . ETH_00031610 79 ATEDGYR|SD 0.099 . ETH_00031610 91 IVLHWWR|EN 0.091 . ETH_00031610 96 WRENCTK|ES 0.079 . ETH_00031610 101 TKESYDK|GG 0.059 . ETH_00031610 115 GATAVLR|VE 0.074 . ETH_00031610 139 TSFISPK|TV 0.106 . ETH_00031610 143 SPKTVER|LQ 0.081 . ETH_00031610 147 VERLQLR|VR 0.070 . ETH_00031610 149 RLQLRVR|RL 0.077 . ETH_00031610 150 LQLRVRR|LP 0.416 . ETH_00031610 156 RLPEEHR|FT 0.086 . ETH_00031610 166 ATSEQLR|ID 0.088 . ETH_00031610 169 EQLRIDR|VV 0.225 . ETH_00031610 172 RIDRVVK|GL 0.132 . ETH_00031610 183 WCGHSDK|LR 0.062 . ETH_00031610 185 GHSDKLR|TY 0.140 . ETH_00031610 199 CELPVVR|TG 0.089 . ETH_00031610 204 VRTGEAK|PH 0.083 . ETH_00031610 216 PTVVHPR|AP 0.105 . ETH_00031610 228 AYEILAK|QV 0.077 . ETH_00031610 247 FVCAPPR|RY 0.077 . ETH_00031610 248 VCAPPRR|YK 0.202 . ETH_00031610 250 APPRRYK|SH 0.202 . ETH_00031610 254 RYKSHAK|TQ 0.074 . ETH_00031610 258 HAKTQAK|AR 0.075 . ETH_00031610 260 KTQAKAR|IT 0.148 . ETH_00031610 266 RITSLVR|QA 0.080 . ETH_00031610 273 QAAADTK|NL 0.072 . ETH_00031610 298 ASAVPLR|FS 0.153 . ETH_00031610 345 SPWPMAK|LE 0.072 . ETH_00031610 375 QVLHEYR|AV 0.101 . ETH_00031610 384 FPDNLPK|GL 0.072 . ETH_00031610 391 GLITAPK|RL 0.074 . ETH_00031610 392 LITAPKR|LS 0.139 . ____________________________^_________________

  • Fasta :-

    >ETH_00031610 ATGATGTGTGCGGTAGCGACAGGCCCTAATGCCATTCCAGTCTCCCTTGAGTGGGGAAAC CAACTCCTCAGCACTGCGGAAGGAACTAGTATGAGCGATGGGCACGCGGAAGGGACGCAG CCGCTTTCGGAGACGCGGTGGGAGTCTGGGTCGGCGTGGGTCCTGAGTGAAAAGGCTCCG GAAGCGACGACGGATAGCAGCAGGATGCCTGCAGAGGCAACAGAAGACGGCTATAGGTCA GACGCGACAGAGATTGTGCTACACTGGTGGAGGGAAAATTGCACGAAAGAGTCCTACGAC AAAGGGGGGGCATTGTGCTGTGTGGGTGCGACGGCGGTACTTCGTGTTGAGCTCGCAGGG AGTCCTTGTGAGGCCCTCTTGGACATTGGGGCTTCGACAAGTTTCATTAGTCCTAAAACA GTCGAACGACTGCAGCTGAGGGTGCGGAGACTTCCAGAAGAGCATAGGTTCACCGTAGCT ACAAGCGAACAACTACGCATTGATCGGGTTGTGAAGGGATTGACGATGTGGTGCGGACAT TCCGACAAACTCCGAACCTATGTGAATGGCCAGTGGTGCGAGTTACCGGTCGTTCGGACT GGTGAAGCAAAGCCGCATGGTGACAGTCCCACCGTAGTCCACCCAAGGGCCCCGTCAGAG CAAGCATATGAGATATTGGCCAAACAAGTGGCGGATATGTCAGCCGAGGAGGCAGCTATC TTCGTATGCGCGCCTCCAAGGAGGTATAAGTCCCACGCGAAGACTCAGGCGAAGGCGCGG ATAACGTCACTCGTTCGTCAGGCGGCGGCTGACACAAAGAATCTCAGCGCTCCATTGTAC GGTTTGCATTTCATACTGGCTTTGCCCGAAGCCGCTTCGGCGGTGCCCCTAAGGTTCTCG GATGAATGGCAAGGCGCGCTTTGCTGCGCGTTAATTGGGAATCAACCGACGTCTTCCGGC TGGGGTAGTCCTTTGCCCTCAACCGCGTCGCCGGCAGCGGAGAGTGACGAGGAGTCTCCC TGGCCTATGGCAAAGCTCGAGCACACCCTGTTCGACGAATGGATAAATTCGACAGAGGCG CAGCATATTCCATGTGAGATTGCCCAGGTGTTGCACGAGTATCGAGCGGTTTTTCCCGAC AACTTACCTAAGGGATTGATTACCGCGCCGAAGCGCCTCTCATGA
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  • Fasta :-

    MMCAVATGPNAIPVSLEWGNQLLSTAEGTSMSDGHAEGTQPLSETRWESGSAWVLSEKAP EATTDSSRMPAEATEDGYRSDATEIVLHWWRENCTKESYDKGGALCCVGATAVLRVELAG SPCEALLDIGASTSFISPKTVERLQLRVRRLPEEHRFTVATSEQLRIDRVVKGLTMWCGH SDKLRTYVNGQWCELPVVRTGEAKPHGDSPTVVHPRAPSEQAYEILAKQVADMSAEEAAI FVCAPPRRYKSHAKTQAKARITSLVRQAAADTKNLSAPLYGLHFILALPEAASAVPLRFS DEWQGALCCALIGNQPTSSGWGSPLPSTASPAAESDEESPWPMAKLEHTLFDEWINSTEA QHIPCEIAQVLHEYRAVFPDNLPKGLITAPKRLS

    No Results
  • title: inhibitor binding site
  • coordinates: D128,G130,S132,F157,T158,V159
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
ETH_00031610335 SPAAESDEES0.997unspETH_00031610335 SPAAESDEES0.997unspETH_00031610335 SPAAESDEES0.997unspETH_0003161030 SAEGTSMSDG0.997unspETH_00031610234 SVADMSAEEA0.991unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India