ETH_00033380 | machado-joseph disease protein, putative

_IDPredictionOTHERSPmTPCS_Position
ETH_00033380OTHER0.9936220.0003300.006047
No Results

  • Fasta :-

    >ETH_00033380 MSMRSRGPLVYWEKQGADRMCALHCLNSVLQGPYFTEAELSSIGLELDQKERQLMAEGGT HSKDYQAFLAEGSGNVAADGYFNVSVLIECLRRKRIHCICQRNVGEHEEAGVDFGYILNH ADHWLALRRVHGTWYNLDSMKPAPTVISSFHLEAFLSSLKGQGYTIFIVRPEVGDLPAPG AMQTRNNNQFYLTQKEIDELHRKAAEQETKAAQEAQRLGGNGDAVSISLSPQLSGSLGPF PKCYSQKTRLQENHSSLVPLEAGNPTRLEDRSPVADAAGPEDASEDPELQEAIRLSMECY KKEGADVTHVSLDALEFHAQDQLMLQL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/ETH_00033380.fa Sequence name : ETH_00033380 Sequence length : 327 VALUES OF COMPUTED PARAMETERS Coef20 : 3.926 CoefTot : -0.044 ChDiff : -14 ZoneTo : 12 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.171 1.006 0.074 0.450 MesoH : -0.591 0.073 -0.459 0.205 MuHd_075 : 24.238 4.363 5.366 4.162 MuHd_095 : 19.790 9.559 4.075 3.235 MuHd_100 : 20.684 10.981 4.671 3.251 MuHd_105 : 16.710 11.113 4.302 2.758 Hmax_075 : 9.300 1.983 -0.657 3.110 Hmax_095 : 3.237 1.837 -2.073 2.494 Hmax_100 : 10.100 2.900 -0.645 2.790 Hmax_105 : 5.000 3.300 -2.501 1.460 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8545 0.1455 DFMC : 0.6599 0.3401
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 327 ETH_00033380 MSMRSRGPLVYWEKQGADRMCALHCLNSVLQGPYFTEAELSSIGLELDQKERQLMAEGGTHSKDYQAFLAEGSGNVAADG 80 YFNVSVLIECLRRKRIHCICQRNVGEHEEAGVDFGYILNHADHWLALRRVHGTWYNLDSMKPAPTVISSFHLEAFLSSLK 160 GQGYTIFIVRPEVGDLPAPGAMQTRNNNQFYLTQKEIDELHRKAAEQETKAAQEAQRLGGNGDAVSISLSPQLSGSLGPF 240 PKCYSQKTRLQENHSSLVPLEAGNPTRLEDRSPVADAAGPEDASEDPELQEAIRLSMECYKKEGADVTHVSLDALEFHAQ 320 DQLMLQL 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ....... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ ETH_00033380 4 ---MSMR|SR 0.164 . ETH_00033380 6 -MSMRSR|GP 0.084 . ETH_00033380 14 PLVYWEK|QG 0.060 . ETH_00033380 19 EKQGADR|MC 0.073 . ETH_00033380 50 GLELDQK|ER 0.054 . ETH_00033380 52 ELDQKER|QL 0.110 . ETH_00033380 63 EGGTHSK|DY 0.072 . ETH_00033380 92 VLIECLR|RK 0.067 . ETH_00033380 93 LIECLRR|KR 0.099 . ETH_00033380 94 IECLRRK|RI 0.076 . ETH_00033380 95 ECLRRKR|IH 0.371 . ETH_00033380 102 IHCICQR|NV 0.158 . ETH_00033380 128 DHWLALR|RV 0.083 . ETH_00033380 129 HWLALRR|VH 0.111 . ETH_00033380 141 YNLDSMK|PA 0.079 . ETH_00033380 160 AFLSSLK|GQ 0.058 . ETH_00033380 170 YTIFIVR|PE 0.076 . ETH_00033380 185 PGAMQTR|NN 0.102 . ETH_00033380 195 QFYLTQK|EI 0.062 . ETH_00033380 202 EIDELHR|KA 0.091 . ETH_00033380 203 IDELHRK|AA 0.123 . ETH_00033380 210 AAEQETK|AA 0.076 . ETH_00033380 217 AAQEAQR|LG 0.102 . ETH_00033380 242 SLGPFPK|CY 0.086 . ETH_00033380 247 PKCYSQK|TR 0.072 . ETH_00033380 249 CYSQKTR|LQ 0.102 . ETH_00033380 267 EAGNPTR|LE 0.094 . ETH_00033380 271 PTRLEDR|SP 0.093 . ETH_00033380 294 ELQEAIR|LS 0.082 . ETH_00033380 301 LSMECYK|KE 0.075 . ETH_00033380 302 SMECYKK|EG 0.097 . ____________________________^_________________

  • Fasta :-

    >ETH_00033380 ATGTCAATGCGATCTCGTGGTCCACTAGTGTACTGGGAAAAGCAAGGGGCAGATCGCATG TGCGCTCTGCACTGCCTAAACTCGGTACTGCAGGGCCCCTACTTCACGGAGGCGGAACTG TCGTCCATAGGGCTGGAACTTGACCAGAAGGAGCGACAATTGATGGCAGAGGGAGGCACC CACTCAAAGGACTACCAAGCGTTCTTGGCGGAAGGCAGCGGCAACGTCGCGGCTGATGGA TACTTCAATGTCAGCGTCTTGATAGAATGCCTACGGCGGAAACGAATCCACTGCATTTGT CAAAGGAATGTGGGCGAGCATGAGGAAGCCGGAGTCGACTTCGGCTACATCTTGAACCAC GCGGACCACTGGCTGGCGCTGCGCAGAGTTCACGGCACATGGTACAATCTGGATAGCATG AAACCGGCGCCCACTGTCATTTCAAGCTTTCACCTGGAGGCATTTTTGAGCTCCTTGAAG GGCCAGGGCTATACTATTTTCATCGTTCGACCGGAAGTGGGTGATCTGCCGGCCCCAGGA GCTATGCAGACTCGAAACAATAATCAATTCTACCTGACACAGAAGGAGATTGACGAGCTC CACAGGAAAGCAGCGGAACAGGAAACGAAGGCGGCTCAAGAAGCCCAACGCCTTGGGGGC AATGGAGATGCAGTGAGTATCTCCTTGTCTCCCCAGTTATCTGGGTCTCTGGGTCCCTTT CCTAAATGCTATTCACAGAAAACAAGACTTCAGGAAAATCATTCCTCGCTAGTGCCCCTA GAGGCAGGGAACCCCACCCGCCTCGAGGATCGAAGCCCTGTAGCTGACGCAGCTGGGCCA GAAGACGCATCAGAGGATCCTGAGTTGCAGGAAGCTATTCGTCTGTCTATGGAATGCTAC AAAAAGGAGGGAGCAGACGTAACCCACGTTAGCCTAGATGCATTGGAGTTCCATGCGCAA GACCAGCTGATGCTGCAGCTTTAG
  • Download Fasta

  • Fasta :-

    MSMRSRGPLVYWEKQGADRMCALHCLNSVLQGPYFTEAELSSIGLELDQKERQLMAEGGT HSKDYQAFLAEGSGNVAADGYFNVSVLIECLRRKRIHCICQRNVGEHEEAGVDFGYILNH ADHWLALRRVHGTWYNLDSMKPAPTVISSFHLEAFLSSLKGQGYTIFIVRPEVGDLPAPG AMQTRNNNQFYLTQKEIDELHRKAAEQETKAAQEAQRLGGNGDAVSISLSPQLSGSLGPF PKCYSQKTRLQENHSSLVPLEAGNPTRLEDRSPVADAAGPEDASEDPELQEAIRLSMECY KKEGADVTHVSLDALEFHAQDQLMLQL

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IDSitePeptideScoreMethod
ETH_00033380296 SAIRLSMECY0.993unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India