ETH_00040480 | Rhomboid family protein , related

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
ETH_00040480OTHER0.9999660.0000230.000011
No Results

  • Fasta :-

    >ETH_00040480 MARPGPTGPWGTKGSWGPPGPQGGPPPWGPPGSTWAPPKGLWGGSPRGGSRVLLREGGPR GKCEPAEQQQQQQQQQQQQRSVALSIALCCYSQTHLGPSGEWEKLFCAALQHLRHPLLSF LARPSLVPFGYGACESNLGLQDPGTAAAAAAAAAAGAPNPAWLLQQLFPHRRCAWGACAG DRGWPPQLVKGGRTAASPAAADSPNPRILLPLGALDTNLIRNYGEVYRVFWASWLHAGWM HLLINLLCQAAVLFILEPMWGFWRCLLTWVISAMGGNTLSAVLDPCTSTVGSSGALYGLL GALVPFAIENWDYLHFPWCVLAIVVVVIATAQLTNMGGFSSVDNFAHLGGCLGGLLVGFA TIYSLRAIRRFSFSVWWARVQLRCCHRCLSATKRNMLARRIRRHEARTRAELKELPADGP PFVWKCYEGFLEWTVRLLALGFLVASLT
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/ETH_00040480.fa Sequence name : ETH_00040480 Sequence length : 448 VALUES OF COMPUTED PARAMETERS Coef20 : 2.465 CoefTot : -6.037 ChDiff : 16 ZoneTo : 55 KR : 6 DE : 0 CleavSite : 57 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.976 2.359 0.406 0.825 MesoH : 1.104 1.201 0.083 0.552 MuHd_075 : 26.159 10.512 4.790 5.238 MuHd_095 : 45.142 19.495 9.929 9.687 MuHd_100 : 29.943 12.270 5.580 6.565 MuHd_105 : 23.606 9.293 6.923 4.979 Hmax_075 : 9.712 -0.875 -0.381 2.742 Hmax_095 : 11.800 9.800 2.328 4.560 Hmax_100 : 11.500 8.100 0.643 4.530 Hmax_105 : 8.600 -0.200 0.070 4.240 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.3761 0.6239 DFMC : 0.7412 0.2588
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 448 ETH_00040480 MARPGPTGPWGTKGSWGPPGPQGGPPPWGPPGSTWAPPKGLWGGSPRGGSRVLLREGGPRGKCEPAEQQQQQQQQQQQQR 80 SVALSIALCCYSQTHLGPSGEWEKLFCAALQHLRHPLLSFLARPSLVPFGYGACESNLGLQDPGTAAAAAAAAAAGAPNP 160 AWLLQQLFPHRRCAWGACAGDRGWPPQLVKGGRTAASPAAADSPNPRILLPLGALDTNLIRNYGEVYRVFWASWLHAGWM 240 HLLINLLCQAAVLFILEPMWGFWRCLLTWVISAMGGNTLSAVLDPCTSTVGSSGALYGLLGALVPFAIENWDYLHFPWCV 320 LAIVVVVIATAQLTNMGGFSSVDNFAHLGGCLGGLLVGFATIYSLRAIRRFSFSVWWARVQLRCCHRCLSATKRNMLARR 400 IRRHEARTRAELKELPADGPPFVWKCYEGFLEWTVRLLALGFLVASLT 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................ 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ ETH_00040480 3 ----MAR|PG 0.098 . ETH_00040480 13 TGPWGTK|GS 0.059 . ETH_00040480 39 STWAPPK|GL 0.081 . ETH_00040480 47 LWGGSPR|GG 0.123 . ETH_00040480 51 SPRGGSR|VL 0.083 . ETH_00040480 55 GSRVLLR|EG 0.131 . ETH_00040480 60 LREGGPR|GK 0.096 . ETH_00040480 62 EGGPRGK|CE 0.063 . ETH_00040480 80 QQQQQQR|SV 0.206 . ETH_00040480 104 PSGEWEK|LF 0.068 . ETH_00040480 114 AALQHLR|HP 0.066 . ETH_00040480 123 LLSFLAR|PS 0.110 . ETH_00040480 171 QQLFPHR|RC 0.076 . ETH_00040480 172 QLFPHRR|CA 0.189 . ETH_00040480 182 GACAGDR|GW 0.106 . ETH_00040480 190 WPPQLVK|GG 0.061 . ETH_00040480 193 QLVKGGR|TA 0.082 . ETH_00040480 207 ADSPNPR|IL 0.099 . ETH_00040480 221 LDTNLIR|NY 0.091 . ETH_00040480 228 NYGEVYR|VF 0.087 . ETH_00040480 264 PMWGFWR|CL 0.080 . ETH_00040480 366 ATIYSLR|AI 0.085 . ETH_00040480 369 YSLRAIR|RF 0.179 . ETH_00040480 370 SLRAIRR|FS 0.184 . ETH_00040480 379 FSVWWAR|VQ 0.072 . ETH_00040480 383 WARVQLR|CC 0.116 . ETH_00040480 387 QLRCCHR|CL 0.113 . ETH_00040480 393 RCLSATK|RN 0.057 . ETH_00040480 394 CLSATKR|NM 0.161 . ETH_00040480 399 KRNMLAR|RI 0.194 . ETH_00040480 400 RNMLARR|IR 0.141 . ETH_00040480 402 MLARRIR|RH 0.270 . ETH_00040480 403 LARRIRR|HE 0.357 . ETH_00040480 407 IRRHEAR|TR 0.105 . ETH_00040480 409 RHEARTR|AE 0.091 . ETH_00040480 413 RTRAELK|EL 0.067 . ETH_00040480 425 GPPFVWK|CY 0.089 . ETH_00040480 436 FLEWTVR|LL 0.081 . ____________________________^_________________

  • Fasta :-

    >ETH_00040480 ATGGCGCGCCCGGGGCCTACGGGGCCCTGGGGAACCAAAGGGTCCTGGGGGCCCCCTGGG CCCCAGGGGGGCCCCCCGCCGTGGGGGCCCCCTGGGTCTACGTGGGCCCCTCCGAAGGGC CTCTGGGGGGGGTCCCCACGAGGGGGCAGCAGGGTACTGCTACGGGAGGGGGGCCCCCGG GGGAAGTGCGAGCCGGCTGAACAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAACGC AGCGTCGCTCTTTCGATCGCTCTCTGCTGCTACTCGCAAACGCATTTGGGCCCATCTGGG GAATGGGAGAAGCTCTTTTGTGCTGCTCTACAGCACCTCCGCCATCCTCTTCTTTCTTTT CTTGCAAGACCGTCGTTGGTGCCGTTTGGGTACGGCGCGTGCGAGTCGAACTTGGGCCTG CAGGACCCGGGAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGCCCCAAACCCT GCGTGGCTGCTGCAGCAGCTTTTTCCCCACAGAAGATGCGCCTGGGGTGCATGCGCTGGA GACCGGGGCTGGCCCCCGCAGCTCGTCAAAGGGGGCAGAACTGCAGCCAGCCCTGCTGCA GCAGACTCCCCCAACCCGCGGATTTTGCTGCCACTGGGGGCTTTGGACACAAATTTAATT CGAAATTACGGAGAAGTTTACAGAGTCTTTTGGGCCTCTTGGTTGCATGCGGGTTGGATG CATTTGTTGATAAATCTTCTTTGTCAGGCGGCAGTTCTTTTCATTCTCGAGCCGATGTGG GGGTTTTGGCGCTGCCTCCTCACCTGGGTAATCAGCGCCATGGGGGGTAATACCCTCAGC GCAGTTCTAGACCCTTGCACCAGCACTGTGGGGTCTTCGGGGGCCCTTTACGGGCTTTTG GGGGCCCTCGTGCCCTTCGCAATCGAGAATTGGGATTACCTCCACTTCCCCTGGTGCGTC CTGGCGATCGTCGTCGTTGTTATTGCCACGGCCCAGCTGACGAATATGGGGGGTTTCTCT TCTGTAGACAACTTCGCGCATTTGGGCGGCTGCCTCGGGGGTTTGCTCGTAGGGTTTGCG ACAATATATTCCCTTCGGGCCATCAGGAGGTTTTCGTTCTCCGTCTGGTGGGCGCGGGTG CAGCTGCGCTGCTGCCACCGCTGCCTTTCAGCAACGAAGCGCAACATGTTGGCCAGACGT ATCAGGAGACATGAAGCCAGGACACGCGCGGAGCTGAAAGAACTGCCCGCAGATGGCCCC CCGTTTGTGTGGAAGTGTTACGAGGGCTTTCTAGAGTGGACTGTGCGGTTGCTGGCTCTT GGGTTCTTGGTGGCGTCGCTGACG
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  • Fasta :-

    MARPGPTGPWGTKGSWGPPGPQGGPPPWGPPGSTWAPPKGLWGGSPRGGSRVLLREGGPR GKCEPAEQQQQQQQQQQQQRSVALSIALCCYSQTHLGPSGEWEKLFCAALQHLRHPLLSF LARPSLVPFGYGACESNLGLQDPGTAAAAAAAAAAGAPNPAWLLQQLFPHRRCAWGACAG DRGWPPQLVKGGRTAASPAAADSPNPRILLPLGALDTNLIRNYGEVYRVFWASWLHAGWM HLLINLLCQAAVLFILEPMWGFWRCLLTWVISAMGGNTLSAVLDPCTSTVGSSGALYGLL GALVPFAIENWDYLHFPWCVLAIVVVVIATAQLTNMGGFSSVDNFAHLGGCLGGLLVGFA TIYSLRAIRRFSFSVWWARVQLRCCHRCLSATKRNMLARRIRRHEARTRAELKELPADGP PFVWKCYEGFLEWTVRLLALGFLVASLT

    No Results
No Results
No Results
IDSitePeptideScoreMethod
ETH_0004048099 SHLGPSGEWE0.993unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India