LdBPK_010670.1 | mitochondrial-processing peptidase subunit beta, putative

_IDPredictionOTHERSPmTPCS_Position
LdBPK_010670.1OTHER0.6213560.0624170.316227
No Results

  • Fasta :-

    >LdBPK_010670.1 MMRRTGAVAATAALPQNMTMKDPLCQQVLSRCTPVVYSSLPNGFRVATEYVKDCPFATVG VWIDAGSRFEDIHNSGVAHFLEHMNFKGTDRYSKSDVENLFEHRGAHFNAYTSRDRTAYY VKAFTKDVDKMIDVVSDLLQRGRYRRHDIEAERPTILAEMREVEELVDEVLMDNVHQAAY DPTTSGLPLTILGPVENIAKNINKSMIEDYVRVHYTGPRMCLVSSGGISPDAAHALAEKY FSGLSSTNNRPLLRGAYKGGHTVLWNEGMATANTAVAFPICGASHPDSYPLQLIHNVIGQ FREGQYDQFSSQRRNPNLPWERVPNLVQLRPFYTPYEETALLGYHIVTARMATSGIARDD AQTLMLNYVLSSLYDLCATKVDDSLLEAAKAEFKASVMMMRDSTTNSAEDLGRQMIHFGR RVPLQEVFERVDAVTPESLRAAAEKYLAVVQPTVSCIGASSTLPKYSPLSLVSNVVHPQL TSAQFPEDARACLL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_010670.1.fa Sequence name : LdBPK_010670 Sequence length : 494 VALUES OF COMPUTED PARAMETERS Coef20 : 4.667 CoefTot : -0.543 ChDiff : -7 ZoneTo : 48 KR : 5 DE : 1 CleavSite : 47 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.341 1.265 0.241 0.456 MesoH : -0.272 0.256 -0.314 0.191 MuHd_075 : 52.144 33.581 14.660 11.262 MuHd_095 : 31.969 30.319 11.759 8.630 MuHd_100 : 36.998 27.494 10.514 8.894 MuHd_105 : 34.338 22.254 8.651 8.079 Hmax_075 : 14.700 13.300 2.763 4.678 Hmax_095 : 16.362 20.600 6.279 5.530 Hmax_100 : 16.100 20.600 6.279 5.220 Hmax_105 : 11.200 14.600 2.485 3.910 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0524 0.9476 DFMC : 0.0654 0.9346 This protein is probably imported in mitochondria. f(Ser) = 0.0625 f(Arg) = 0.0833 CMi = 0.33482 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 494 LdBPK_010670.1 MMRRTGAVAATAALPQNMTMKDPLCQQVLSRCTPVVYSSLPNGFRVATEYVKDCPFATVGVWIDAGSRFEDIHNSGVAHF 80 LEHMNFKGTDRYSKSDVENLFEHRGAHFNAYTSRDRTAYYVKAFTKDVDKMIDVVSDLLQRGRYRRHDIEAERPTILAEM 160 REVEELVDEVLMDNVHQAAYDPTTSGLPLTILGPVENIAKNINKSMIEDYVRVHYTGPRMCLVSSGGISPDAAHALAEKY 240 FSGLSSTNNRPLLRGAYKGGHTVLWNEGMATANTAVAFPICGASHPDSYPLQLIHNVIGQFREGQYDQFSSQRRNPNLPW 320 ERVPNLVQLRPFYTPYEETALLGYHIVTARMATSGIARDDAQTLMLNYVLSSLYDLCATKVDDSLLEAAKAEFKASVMMM 400 RDSTTNSAEDLGRQMIHFGRRVPLQEVFERVDAVTPESLRAAAEKYLAVVQPTVSCIGASSTLPKYSPLSLVSNVVHPQL 480 TSAQFPEDARACLL 560 ................................................................................ 80 .................................................................P.............. 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 .............. 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LdBPK_010670.1 3 ----MMR|RT 0.122 . LdBPK_010670.1 4 ---MMRR|TG 0.104 . LdBPK_010670.1 21 PQNMTMK|DP 0.077 . LdBPK_010670.1 31 CQQVLSR|CT 0.096 . LdBPK_010670.1 45 SLPNGFR|VA 0.089 . LdBPK_010670.1 52 VATEYVK|DC 0.060 . LdBPK_010670.1 68 WIDAGSR|FE 0.074 . LdBPK_010670.1 87 LEHMNFK|GT 0.078 . LdBPK_010670.1 91 NFKGTDR|YS 0.079 . LdBPK_010670.1 94 GTDRYSK|SD 0.171 . LdBPK_010670.1 104 ENLFEHR|GA 0.098 . LdBPK_010670.1 114 FNAYTSR|DR 0.112 . LdBPK_010670.1 116 AYTSRDR|TA 0.075 . LdBPK_010670.1 122 RTAYYVK|AF 0.066 . LdBPK_010670.1 126 YVKAFTK|DV 0.119 . LdBPK_010670.1 130 FTKDVDK|MI 0.068 . LdBPK_010670.1 141 VSDLLQR|GR 0.068 . LdBPK_010670.1 143 DLLQRGR|YR 0.081 . LdBPK_010670.1 145 LQRGRYR|RH 0.084 . LdBPK_010670.1 146 QRGRYRR|HD 0.618 *ProP* LdBPK_010670.1 153 HDIEAER|PT 0.090 . LdBPK_010670.1 161 TILAEMR|EV 0.133 . LdBPK_010670.1 200 PVENIAK|NI 0.065 . LdBPK_010670.1 204 IAKNINK|SM 0.075 . LdBPK_010670.1 212 MIEDYVR|VH 0.082 . LdBPK_010670.1 219 VHYTGPR|MC 0.074 . LdBPK_010670.1 239 AHALAEK|YF 0.064 . LdBPK_010670.1 250 LSSTNNR|PL 0.096 . LdBPK_010670.1 254 NNRPLLR|GA 0.194 . LdBPK_010670.1 258 LLRGAYK|GG 0.084 . LdBPK_010670.1 302 NVIGQFR|EG 0.079 . LdBPK_010670.1 313 DQFSSQR|RN 0.069 . LdBPK_010670.1 314 QFSSQRR|NP 0.099 . LdBPK_010670.1 322 PNLPWER|VP 0.065 . LdBPK_010670.1 330 PNLVQLR|PF 0.074 . LdBPK_010670.1 350 YHIVTAR|MA 0.141 . LdBPK_010670.1 358 ATSGIAR|DD 0.134 . LdBPK_010670.1 380 YDLCATK|VD 0.057 . LdBPK_010670.1 390 SLLEAAK|AE 0.065 . LdBPK_010670.1 394 AAKAEFK|AS 0.061 . LdBPK_010670.1 401 ASVMMMR|DS 0.111 . LdBPK_010670.1 413 SAEDLGR|QM 0.095 . LdBPK_010670.1 420 QMIHFGR|RV 0.124 . LdBPK_010670.1 421 MIHFGRR|VP 0.116 . LdBPK_010670.1 430 LQEVFER|VD 0.080 . LdBPK_010670.1 440 VTPESLR|AA 0.077 . LdBPK_010670.1 445 LRAAAEK|YL 0.107 . LdBPK_010670.1 465 ASSTLPK|YS 0.081 . LdBPK_010670.1 490 QFPEDAR|AC 0.069 . ____________________________^_________________

  • Fasta :-

    >LdBPK_010670.1 ATGATGCGGCGAACCGGCGCCGTGGCGGCGACGGCGGCGCTGCCGCAAAACATGACAATG AAAGACCCGCTCTGCCAGCAGGTGCTGAGCCGCTGCACCCCCGTCGTCTACTCCTCTCTG CCGAACGGCTTCCGGGTCGCGACGGAGTACGTGAAGGACTGCCCCTTCGCCACCGTCGGC GTGTGGATCGACGCCGGCAGCCGCTTCGAGGACATCCACAACAGCGGCGTGGCGCACTTC CTGGAGCACATGAACTTCAAGGGCACCGACCGGTACTCGAAGAGCGACGTCGAGAACCTC TTCGAGCACCGCGGCGCGCACTTCAACGCGTACACCTCGCGCGACCGCACCGCCTACTAC GTGAAGGCGTTCACGAAGGACGTGGACAAGATGATCGACGTCGTGTCAGACCTCCTCCAG CGTGGCCGCTACCGCCGTCACGACATCGAGGCGGAGCGGCCGACGATCTTGGCGGAGATG CGCGAGGTAGAGGAGCTCGTGGATGAGGTGCTCATGGACAACGTGCACCAAGCCGCCTAC GACCCGACGACGAGTGGGCTGCCGCTCACAATCCTCGGCCCGGTCGAGAACATCGCCAAG AACATCAACAAGTCCATGATCGAGGACTACGTGCGGGTGCACTACACAGGACCGCGCATG TGCCTCGTGTCGTCTGGCGGCATCTCGCCTGATGCGGCGCACGCGCTGGCGGAGAAGTAC TTTAGCGGCCTGTCCTCCACGAACAACCGCCCGCTTCTGCGCGGTGCGTACAAGGGTGGC CACACAGTTCTGTGGAACGAGGGAATGGCGACAGCGAACACGGCCGTGGCTTTCCCGATC TGCGGCGCCTCGCACCCGGACAGCTACCCGCTGCAGCTGATACACAACGTGATTGGGCAG TTTCGCGAAGGGCAGTACGACCAGTTCAGCTCCCAGCGCCGCAACCCGAACCTACCGTGG GAGCGGGTGCCGAACCTGGTCCAGCTGCGCCCCTTCTACACGCCGTACGAGGAGACGGCG CTGCTCGGCTACCACATCGTGACGGCCCGCATGGCGACGAGCGGCATTGCCCGCGACGAC GCGCAGACACTGATGCTCAACTACGTCCTCAGCTCGCTCTACGACCTCTGTGCCACCAAG GTAGACGACTCCCTGTTGGAGGCGGCCAAGGCGGAGTTTAAGGCGTCCGTCATGATGATG CGCGACAGCACGACGAACAGCGCCGAAGACCTCGGGCGGCAGATGATTCACTTTGGCCGC CGCGTGCCGCTGCAGGAGGTGTTTGAGCGGGTCGACGCCGTCACGCCCGAGTCCCTGCGC GCCGCGGCGGAGAAGTACTTGGCCGTCGTGCAACCCACCGTGTCCTGCATCGGCGCGAGC AGCACGTTGCCCAAGTACAGCCCCCTCTCGCTCGTGTCAAATGTGGTGCACCCGCAGCTG ACGTCGGCGCAGTTCCCGGAGGACGCGCGTGCGTGTCTGCTGTGA
  • Download Fasta

  • Fasta :-

    MMRRTGAVAATAALPQNMTMKDPLCQQVLSRCTPVVYSSLPNGFRVATEYVKDCPFATVG VWIDAGSRFEDIHNSGVAHFLEHMNFKGTDRYSKSDVENLFEHRGAHFNAYTSRDRTAYY VKAFTKDVDKMIDVVSDLLQRGRYRRHDIEAERPTILAEMREVEELVDEVLMDNVHQAAY DPTTSGLPLTILGPVENIAKNINKSMIEDYVRVHYTGPRMCLVSSGGISPDAAHALAEKY FSGLSSTNNRPLLRGAYKGGHTVLWNEGMATANTAVAFPICGASHPDSYPLQLIHNVIGQ FREGQYDQFSSQRRNPNLPWERVPNLVQLRPFYTPYEETALLGYHIVTARMATSGIARDD AQTLMLNYVLSSLYDLCATKVDDSLLEAAKAEFKASVMMMRDSTTNSAEDLGRQMIHFGR RVPLQEVFERVDAVTPESLRAAAEKYLAVVQPTVSCIGASSTLPKYSPLSLVSNVVHPQL TSAQFPEDARACLL

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_010670.1384 SKVDDSLLEA0.992unspLdBPK_010670.1384 SKVDDSLLEA0.992unspLdBPK_010670.1384 SKVDDSLLEA0.992unspLdBPK_010670.1403 SMMRDSTTNS0.991unspLdBPK_010670.1407 SSTTNSAEDL0.994unspLdBPK_010670.193 STDRYSKSDV0.998unspLdBPK_010670.1205 SNINKSMIED0.992unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India