LdBPK_020680.1 | ATP-dependent Clp protease subunit, heat shock protein 78 (HSP78), putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0005524      

  • Computed_GO_Functions:  ATP binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0005739      

  • Curated_GO_Components:  mitochondrion      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LdBPK_020680.1mTP0.0921400.0055910.902269CS pos: 62-63. CRW-QS. Pr: 0.3192
No Results

  • Fasta :-

    >LdBPK_020680.1 MLRRRLVQASTALRCGSTAALAAPFGPFGCGGPRKTAVAAVACSPLASSTAAHPTLRTSC RWQSTGVTPWNSSGNSGGGGNGGQQQGRTWVNPNAVPPGEFLKKYARDLTEEARMGRLDP IVGREEVIRRTIQVVSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGEVPESIKDRQVYA LDMGTLVAGAKFRGEFEERLKGVLKDTIQSHGKVILFIDELHTLVGAGSSGDGSMDAANL LKPSLARGELHCIGATTLDEYRQHIEKDAALARRFQSVLVTEPTVEETISILRGIKEKYE AHHGCLIKDEALVYAAVNSHRYLSERRLPDKAIDLIDEAASRLRLQQESKPEALDLIERE LIRLKIEAEAVKKDKDEVGKEKLENLYEQISQKQKEYDALEERWKKEKNLFQTIKQRTEE LDVLRHHLEQAMNSGDFAKAGEIQHSQIPNLLKQIEKDKHLASSKNFMVHDSVTSKDIAE VIARATGIPVAQLMTSEREKLIHMDAELKKTIMGQDAAIESITNVVRISRAGLHSHKRPL GSFLFLGPTGVGKTEVCKSLAKFLFDDESFICRIDMSEYMERHSVHRLIGAPPGYVGYEE GGELTESVRRRPYQIVLFDEFEKAHPSVSNILLQVLDEGHLTDSHGRRVDFKNTIIILTS NIGADVIARLPEGEPSISAMPAVMEQVRQRLAPEFINRLDDIIMFNRLSREDIRSIVEIL FAQVQKMLTEHNITLEESTEVYDWLSVNGYSAVYGARPLKRLVQSELLNQLALMLLDGRI REGELVRLSVQDGHVVVVANHALSPEKGPTDARLLDQ
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_020680.1.fa Sequence name : LdBPK_020680 Sequence length : 817 VALUES OF COMPUTED PARAMETERS Coef20 : 5.286 CoefTot : -2.918 ChDiff : -5 ZoneTo : 99 KR : 9 DE : 0 CleavSite : 90 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.529 1.400 0.335 0.511 MesoH : 0.143 0.279 -0.138 0.161 MuHd_075 : 39.668 20.389 9.216 9.118 MuHd_095 : 29.419 18.607 7.405 6.780 MuHd_100 : 26.947 15.645 6.506 6.927 MuHd_105 : 26.982 18.473 8.025 7.623 Hmax_075 : 14.000 12.688 2.192 4.209 Hmax_095 : 10.400 7.300 2.642 2.485 Hmax_100 : 7.600 7.600 0.367 2.750 Hmax_105 : 6.067 7.500 0.469 1.720 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0116 0.9884 DFMC : 0.0039 0.9961 This protein is probably imported in mitochondria. f(Ser) = 0.1010 f(Arg) = 0.0808 CMi = 0.55157 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 817 LdBPK_020680.1 MLRRRLVQASTALRCGSTAALAAPFGPFGCGGPRKTAVAAVACSPLASSTAAHPTLRTSCRWQSTGVTPWNSSGNSGGGG 80 NGGQQQGRTWVNPNAVPPGEFLKKYARDLTEEARMGRLDPIVGREEVIRRTIQVVSRRTKNNPVLIGEPGVGKTAIVEGL 160 AQRIVKGEVPESIKDRQVYALDMGTLVAGAKFRGEFEERLKGVLKDTIQSHGKVILFIDELHTLVGAGSSGDGSMDAANL 240 LKPSLARGELHCIGATTLDEYRQHIEKDAALARRFQSVLVTEPTVEETISILRGIKEKYEAHHGCLIKDEALVYAAVNSH 320 RYLSERRLPDKAIDLIDEAASRLRLQQESKPEALDLIERELIRLKIEAEAVKKDKDEVGKEKLENLYEQISQKQKEYDAL 400 EERWKKEKNLFQTIKQRTEELDVLRHHLEQAMNSGDFAKAGEIQHSQIPNLLKQIEKDKHLASSKNFMVHDSVTSKDIAE 480 VIARATGIPVAQLMTSEREKLIHMDAELKKTIMGQDAAIESITNVVRISRAGLHSHKRPLGSFLFLGPTGVGKTEVCKSL 560 AKFLFDDESFICRIDMSEYMERHSVHRLIGAPPGYVGYEEGGELTESVRRRPYQIVLFDEFEKAHPSVSNILLQVLDEGH 640 LTDSHGRRVDFKNTIIILTSNIGADVIARLPEGEPSISAMPAVMEQVRQRLAPEFINRLDDIIMFNRLSREDIRSIVEIL 720 FAQVQKMLTEHNITLEESTEVYDWLSVNGYSAVYGARPLKRLVQSELLNQLALMLLDGRIREGELVRLSVQDGHVVVVAN 800 HALSPEKGPTDARLLDQ 880 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ................................................................................ 800 ................. 880 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_020680.1 3 ----MLR|RR 0.067 . LdBPK_020680.1 4 ---MLRR|RL 0.115 . LdBPK_020680.1 5 --MLRRR|LV 0.210 . LdBPK_020680.1 14 QASTALR|CG 0.096 . LdBPK_020680.1 34 FGCGGPR|KT 0.077 . LdBPK_020680.1 35 GCGGPRK|TA 0.111 . LdBPK_020680.1 57 AAHPTLR|TS 0.095 . LdBPK_020680.1 61 TLRTSCR|WQ 0.169 . LdBPK_020680.1 88 GGQQQGR|TW 0.083 . LdBPK_020680.1 103 PPGEFLK|KY 0.064 . LdBPK_020680.1 104 PGEFLKK|YA 0.129 . LdBPK_020680.1 107 FLKKYAR|DL 0.139 . LdBPK_020680.1 114 DLTEEAR|MG 0.071 . LdBPK_020680.1 117 EEARMGR|LD 0.193 . LdBPK_020680.1 124 LDPIVGR|EE 0.072 . LdBPK_020680.1 129 GREEVIR|RT 0.110 . LdBPK_020680.1 130 REEVIRR|TI 0.120 . LdBPK_020680.1 137 TIQVVSR|RT 0.088 . LdBPK_020680.1 138 IQVVSRR|TK 0.107 . LdBPK_020680.1 140 VVSRRTK|NN 0.119 . LdBPK_020680.1 153 GEPGVGK|TA 0.067 . LdBPK_020680.1 163 VEGLAQR|IV 0.106 . LdBPK_020680.1 166 LAQRIVK|GE 0.106 . LdBPK_020680.1 174 EVPESIK|DR 0.058 . LdBPK_020680.1 176 PESIKDR|QV 0.204 . LdBPK_020680.1 191 TLVAGAK|FR 0.076 . LdBPK_020680.1 193 VAGAKFR|GE 0.103 . LdBPK_020680.1 199 RGEFEER|LK 0.092 . LdBPK_020680.1 201 EFEERLK|GV 0.066 . LdBPK_020680.1 205 RLKGVLK|DT 0.082 . LdBPK_020680.1 213 TIQSHGK|VI 0.064 . LdBPK_020680.1 242 DAANLLK|PS 0.059 . LdBPK_020680.1 247 LKPSLAR|GE 0.087 . LdBPK_020680.1 262 TTLDEYR|QH 0.076 . LdBPK_020680.1 267 YRQHIEK|DA 0.082 . LdBPK_020680.1 273 KDAALAR|RF 0.106 . LdBPK_020680.1 274 DAALARR|FQ 0.157 . LdBPK_020680.1 293 ETISILR|GI 0.080 . LdBPK_020680.1 296 SILRGIK|EK 0.100 . LdBPK_020680.1 298 LRGIKEK|YE 0.077 . LdBPK_020680.1 308 HHGCLIK|DE 0.067 . LdBPK_020680.1 321 AAVNSHR|YL 0.101 . LdBPK_020680.1 326 HRYLSER|RL 0.097 . LdBPK_020680.1 327 RYLSERR|LP 0.112 . LdBPK_020680.1 331 ERRLPDK|AI 0.079 . LdBPK_020680.1 342 IDEAASR|LR 0.073 . LdBPK_020680.1 344 EAASRLR|LQ 0.077 . LdBPK_020680.1 350 RLQQESK|PE 0.058 . LdBPK_020680.1 359 ALDLIER|EL 0.068 . LdBPK_020680.1 363 IERELIR|LK 0.088 . LdBPK_020680.1 365 RELIRLK|IE 0.054 . LdBPK_020680.1 372 IEAEAVK|KD 0.060 . LdBPK_020680.1 373 EAEAVKK|DK 0.141 . LdBPK_020680.1 375 EAVKKDK|DE 0.078 . LdBPK_020680.1 380 DKDEVGK|EK 0.061 . LdBPK_020680.1 382 DEVGKEK|LE 0.061 . LdBPK_020680.1 393 YEQISQK|QK 0.064 . LdBPK_020680.1 395 QISQKQK|EY 0.083 . LdBPK_020680.1 403 YDALEER|WK 0.074 . LdBPK_020680.1 405 ALEERWK|KE 0.058 . LdBPK_020680.1 406 LEERWKK|EK 0.199 . LdBPK_020680.1 408 ERWKKEK|NL 0.083 . LdBPK_020680.1 415 NLFQTIK|QR 0.069 . LdBPK_020680.1 417 FQTIKQR|TE 0.073 . LdBPK_020680.1 425 EELDVLR|HH 0.072 . LdBPK_020680.1 439 NSGDFAK|AG 0.089 . LdBPK_020680.1 453 QIPNLLK|QI 0.070 . LdBPK_020680.1 457 LLKQIEK|DK 0.062 . LdBPK_020680.1 459 KQIEKDK|HL 0.068 . LdBPK_020680.1 465 KHLASSK|NF 0.059 . LdBPK_020680.1 476 HDSVTSK|DI 0.095 . LdBPK_020680.1 484 IAEVIAR|AT 0.121 . LdBPK_020680.1 498 QLMTSER|EK 0.088 . LdBPK_020680.1 500 MTSEREK|LI 0.067 . LdBPK_020680.1 509 HMDAELK|KT 0.064 . LdBPK_020680.1 510 MDAELKK|TI 0.130 . LdBPK_020680.1 527 SITNVVR|IS 0.114 . LdBPK_020680.1 530 NVVRISR|AG 0.144 . LdBPK_020680.1 537 AGLHSHK|RP 0.054 . LdBPK_020680.1 538 GLHSHKR|PL 0.287 . LdBPK_020680.1 553 GPTGVGK|TE 0.056 . LdBPK_020680.1 558 GKTEVCK|SL 0.084 . LdBPK_020680.1 562 VCKSLAK|FL 0.071 . LdBPK_020680.1 573 DESFICR|ID 0.085 . LdBPK_020680.1 582 MSEYMER|HS 0.088 . LdBPK_020680.1 587 ERHSVHR|LI 0.141 . LdBPK_020680.1 609 ELTESVR|RR 0.066 . LdBPK_020680.1 610 LTESVRR|RP 0.097 . LdBPK_020680.1 611 TESVRRR|PY 0.304 . LdBPK_020680.1 623 LFDEFEK|AH 0.056 . LdBPK_020680.1 647 LTDSHGR|RV 0.112 . LdBPK_020680.1 648 TDSHGRR|VD 0.184 . LdBPK_020680.1 652 GRRVDFK|NT 0.098 . LdBPK_020680.1 669 GADVIAR|LP 0.091 . LdBPK_020680.1 688 AVMEQVR|QR 0.077 . LdBPK_020680.1 690 MEQVRQR|LA 0.103 . LdBPK_020680.1 698 APEFINR|LD 0.093 . LdBPK_020680.1 707 DIIMFNR|LS 0.078 . LdBPK_020680.1 710 MFNRLSR|ED 0.237 . LdBPK_020680.1 714 LSREDIR|SI 0.164 . LdBPK_020680.1 726 LFAQVQK|ML 0.072 . LdBPK_020680.1 757 SAVYGAR|PL 0.093 . LdBPK_020680.1 760 YGARPLK|RL 0.123 . LdBPK_020680.1 761 GARPLKR|LV 0.290 . LdBPK_020680.1 779 LMLLDGR|IR 0.072 . LdBPK_020680.1 781 LLDGRIR|EG 0.079 . LdBPK_020680.1 787 REGELVR|LS 0.082 . LdBPK_020680.1 807 HALSPEK|GP 0.063 . LdBPK_020680.1 813 KGPTDAR|LL 0.097 . ____________________________^_________________

  • Fasta :-

    >LdBPK_020680.1 ATGCTGCGCAGGCGTCTCGTTCAGGCCTCCACGGCGCTTCGGTGTGGCAGCACCGCTGCC CTGGCGGCTCCCTTCGGCCCTTTCGGGTGCGGCGGCCCCCGCAAAACTGCCGTGGCTGCT GTGGCGTGCTCGCCGTTGGCATCGAGCACGGCGGCACACCCTACGTTACGGACGAGCTGC CGATGGCAGTCGACAGGCGTCACGCCGTGGAATAGCAGCGGCAACAGCGGTGGAGGCGGC AACGGCGGCCAGCAGCAGGGACGCACGTGGGTGAACCCGAACGCTGTGCCGCCGGGCGAG TTCCTAAAGAAGTACGCGCGCGACTTGACCGAGGAGGCGCGCATGGGTCGCCTGGACCCC ATCGTGGGGCGCGAGGAGGTCATTCGACGCACCATCCAGGTCGTCTCGCGGCGTACCAAG AACAACCCGGTGCTGATTGGTGAGCCCGGCGTCGGTAAGACGGCCATCGTCGAAGGTCTG GCGCAGCGGATCGTGAAGGGCGAGGTGCCAGAGAGCATCAAGGACCGCCAGGTGTACGCG CTAGACATGGGCACCCTCGTCGCCGGCGCCAAGTTCCGCGGCGAGTTCGAGGAGCGCCTC AAGGGGGTGCTCAAGGACACCATACAGTCGCACGGCAAGGTTATCTTGTTTATCGACGAG CTGCATACGTTGGTCGGCGCCGGCTCCTCCGGCGATGGGTCGATGGACGCGGCGAACCTG CTGAAGCCGTCACTGGCGCGCGGCGAGCTGCACTGCATCGGCGCCACCACCTTGGACGAG TACCGCCAGCACATCGAGAAGGACGCCGCGCTGGCGCGCCGCTTCCAGTCGGTGCTGGTT ACGGAGCCCACTGTGGAAGAGACCATCTCCATTCTGCGCGGCATCAAGGAGAAGTACGAG GCCCACCACGGCTGCCTCATCAAGGACGAGGCCCTCGTCTACGCCGCTGTCAACTCCCAC CGCTACCTCTCGGAGCGTCGCCTGCCAGACAAGGCCATCGACCTTATCGACGAGGCCGCT AGCCGCCTGCGCCTGCAGCAGGAGTCGAAGCCAGAGGCGCTCGACCTCATCGAGCGCGAG CTGATCCGCCTGAAGATCGAGGCGGAGGCGGTGAAGAAGGATAAGGACGAGGTGGGCAAG GAGAAGCTGGAGAACTTGTACGAGCAAATTTCGCAGAAGCAGAAGGAGTACGACGCACTC GAGGAGCGGTGGAAGAAGGAGAAGAACCTGTTCCAGACGATCAAGCAGCGCACCGAGGAA CTCGACGTGCTGCGGCACCACCTCGAGCAGGCGATGAACAGCGGCGACTTTGCCAAGGCG GGCGAGATACAGCACAGCCAAATCCCCAACCTGCTGAAGCAGATCGAGAAGGACAAGCAC CTCGCCAGCTCCAAGAACTTCATGGTGCACGACAGCGTCACCTCAAAGGACATTGCTGAG GTGATTGCCCGCGCGACCGGCATCCCCGTGGCGCAGCTCATGACGAGTGAGCGGGAGAAG CTCATTCACATGGATGCAGAGCTAAAGAAGACGATCATGGGCCAGGATGCGGCTATCGAG TCCATTACGAATGTGGTGCGCATCTCTCGCGCCGGCCTGCACTCGCACAAGCGCCCGCTA GGCTCCTTTCTGTTCCTCGGCCCCACCGGCGTCGGTAAGACGGAGGTGTGCAAGAGCCTC GCCAAGTTCCTCTTCGACGACGAGTCGTTCATCTGCCGCATCGACATGAGCGAGTACATG GAACGGCACTCGGTGCACCGGCTGATCGGCGCCCCACCAGGGTACGTCGGCTATGAGGAA GGCGGCGAGCTGACGGAATCGGTGCGGCGTCGCCCTTACCAAATCGTCCTCTTCGACGAG TTCGAGAAGGCCCACCCGAGCGTGTCGAACATTCTTCTCCAAGTGCTGGACGAGGGGCAC CTGACCGACAGCCACGGCCGCCGCGTCGACTTCAAGAACACCATCATCATCCTGACCTCC AACATCGGCGCTGACGTCATCGCCCGCCTGCCGGAGGGGGAGCCGAGCATCAGTGCGATG CCGGCTGTCATGGAGCAGGTGCGCCAGCGCCTGGCGCCCGAGTTCATTAACCGTCTCGAC GACATCATCATGTTTAACCGCCTCAGCCGTGAGGACATCCGCAGCATCGTGGAGATTTTG TTCGCACAGGTGCAGAAAATGCTGACGGAGCATAACATCACATTGGAAGAGTCCACGGAG GTGTACGACTGGCTCAGCGTCAACGGCTACAGCGCTGTGTATGGTGCGCGGCCCCTGAAG CGTCTCGTGCAGAGCGAACTGCTCAACCAACTGGCGCTGATGTTGCTTGATGGCCGCATC CGTGAGGGTGAGCTTGTGAGGCTGTCTGTGCAGGACGGTCATGTCGTGGTGGTTGCCAAT CACGCGCTCTCTCCTGAGAAGGGGCCGACTGACGCGCGACTGCTGGATCAGTGA
  • Download Fasta

  • Fasta :-

    MLRRRLVQASTALRCGSTAALAAPFGPFGCGGPRKTAVAAVACSPLASSTAAHPTLRTSC RWQSTGVTPWNSSGNSGGGGNGGQQQGRTWVNPNAVPPGEFLKKYARDLTEEARMGRLDP IVGREEVIRRTIQVVSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGEVPESIKDRQVYA LDMGTLVAGAKFRGEFEERLKGVLKDTIQSHGKVILFIDELHTLVGAGSSGDGSMDAANL LKPSLARGELHCIGATTLDEYRQHIEKDAALARRFQSVLVTEPTVEETISILRGIKEKYE AHHGCLIKDEALVYAAVNSHRYLSERRLPDKAIDLIDEAASRLRLQQESKPEALDLIERE LIRLKIEAEAVKKDKDEVGKEKLENLYEQISQKQKEYDALEERWKKEKNLFQTIKQRTEE LDVLRHHLEQAMNSGDFAKAGEIQHSQIPNLLKQIEKDKHLASSKNFMVHDSVTSKDIAE VIARATGIPVAQLMTSEREKLIHMDAELKKTIMGQDAAIESITNVVRISRAGLHSHKRPL GSFLFLGPTGVGKTEVCKSLAKFLFDDESFICRIDMSEYMERHSVHRLIGAPPGYVGYEE GGELTESVRRRPYQIVLFDEFEKAHPSVSNILLQVLDEGHLTDSHGRRVDFKNTIIILTS NIGADVIARLPEGEPSISAMPAVMEQVRQRLAPEFINRLDDIIMFNRLSREDIRSIVEIL FAQVQKMLTEHNITLEESTEVYDWLSVNGYSAVYGARPLKRLVQSELLNQLALMLLDGRI REGELVRLSVQDGHVVVVANHALSPEKGPTDARLLDQ

  • title: ATP binding site
  • coordinates: E148,P149,G150,V151,G152,K153,T154,A155,D219,T257
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_020680.1324 SHRYLSERRL0.997unspLdBPK_020680.1324 SHRYLSERRL0.997unspLdBPK_020680.1324 SHRYLSERRL0.997unspLdBPK_020680.1535 SAGLHSHKRP0.995unspLdBPK_020680.1584 SMERHSVHRL0.995unspLdBPK_020680.1709 SFNRLSREDI0.998unspLdBPK_020680.1789 SLVRLSVQDG0.996unspLdBPK_020680.1804 SNHALSPEKG0.997unspLdBPK_020680.159 STLRTSCRWQ0.994unspLdBPK_020680.1172 SEVPESIKDR0.997unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India