LdBPK_030520.1 | 26S protease regulatory subunit, putative

_IDPredictionOTHERSPmTPCS_Position
LdBPK_030520.1OTHER0.9999430.0000190.000038
No Results

  • Fasta :-

    >LdBPK_030520.1 MQSNAPFDPEREALRNEAIKKTVERNVTQARLKKVNDDVKLQQRELDKVEDQVNALLSIG HYVGEVLKRVDEERFIVKSISGARHLVGYRKSIKPEKLKFGARVALEITTFTIVKVLPRE VDPQVYSMQYMSSDKDVSFQDIGGLQPQMRQMREVIELPLTNPELFVRVGIAPPKGVLLY GPPGTGKTLLAKAIAANVDAAFLKIVASSIVDKYIGESARVIREMFAYAREHEPCIIFID EVDAIGSKRIEGSSSDREIQRTLMELLNQMDGFDKLGKVKVIMATNRPDTLDAALMRPGR LDRKIEIPLPNEAGRLDILRIHSAKITKKGDIDFESVVKLSEGFNGADLRNVCTEAGMFA IRAGRDYVENDDFNKAVRKVADMKRLEGTAHQYSDQ
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_030520.1.fa Sequence name : LdBPK_030520 Sequence length : 396 VALUES OF COMPUTED PARAMETERS Coef20 : 3.480 CoefTot : -0.289 ChDiff : 3 ZoneTo : 7 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.612 1.471 -0.041 0.486 MesoH : -0.447 0.599 -0.304 0.287 MuHd_075 : 20.790 12.611 6.346 4.763 MuHd_095 : 22.380 9.397 4.782 5.168 MuHd_100 : 19.139 8.268 4.157 4.176 MuHd_105 : 18.243 8.941 3.720 3.827 Hmax_075 : 3.033 4.783 -1.184 2.683 Hmax_095 : -9.537 -3.937 -5.207 0.464 Hmax_100 : -7.900 -1.000 -4.137 1.380 Hmax_105 : -7.900 0.700 -4.137 1.470 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9446 0.0554 DFMC : 0.9501 0.0499
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 396 LdBPK_030520.1 MQSNAPFDPEREALRNEAIKKTVERNVTQARLKKVNDDVKLQQRELDKVEDQVNALLSIGHYVGEVLKRVDEERFIVKSI 80 SGARHLVGYRKSIKPEKLKFGARVALEITTFTIVKVLPREVDPQVYSMQYMSSDKDVSFQDIGGLQPQMRQMREVIELPL 160 TNPELFVRVGIAPPKGVLLYGPPGTGKTLLAKAIAANVDAAFLKIVASSIVDKYIGESARVIREMFAYAREHEPCIIFID 240 EVDAIGSKRIEGSSSDREIQRTLMELLNQMDGFDKLGKVKVIMATNRPDTLDAALMRPGRLDRKIEIPLPNEAGRLDILR 320 IHSAKITKKGDIDFESVVKLSEGFNGADLRNVCTEAGMFAIRAGRDYVENDDFNKAVRKVADMKRLEGTAHQYSDQ 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ............................................................................ 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_030520.1 11 APFDPER|EA 0.100 . LdBPK_030520.1 15 PEREALR|NE 0.073 . LdBPK_030520.1 20 LRNEAIK|KT 0.070 . LdBPK_030520.1 21 RNEAIKK|TV 0.177 . LdBPK_030520.1 25 IKKTVER|NV 0.159 . LdBPK_030520.1 31 RNVTQAR|LK 0.089 . LdBPK_030520.1 33 VTQARLK|KV 0.073 . LdBPK_030520.1 34 TQARLKK|VN 0.389 . LdBPK_030520.1 40 KVNDDVK|LQ 0.062 . LdBPK_030520.1 44 DVKLQQR|EL 0.130 . LdBPK_030520.1 48 QQRELDK|VE 0.063 . LdBPK_030520.1 68 YVGEVLK|RV 0.071 . LdBPK_030520.1 69 VGEVLKR|VD 0.145 . LdBPK_030520.1 74 KRVDEER|FI 0.153 . LdBPK_030520.1 78 EERFIVK|SI 0.114 . LdBPK_030520.1 84 KSISGAR|HL 0.099 . LdBPK_030520.1 90 RHLVGYR|KS 0.074 . LdBPK_030520.1 91 HLVGYRK|SI 0.116 . LdBPK_030520.1 94 GYRKSIK|PE 0.060 . LdBPK_030520.1 97 KSIKPEK|LK 0.069 . LdBPK_030520.1 99 IKPEKLK|FG 0.063 . LdBPK_030520.1 103 KLKFGAR|VA 0.095 . LdBPK_030520.1 115 TTFTIVK|VL 0.059 . LdBPK_030520.1 119 IVKVLPR|EV 0.192 . LdBPK_030520.1 135 QYMSSDK|DV 0.095 . LdBPK_030520.1 150 GLQPQMR|QM 0.121 . LdBPK_030520.1 153 PQMRQMR|EV 0.400 . LdBPK_030520.1 168 NPELFVR|VG 0.076 . LdBPK_030520.1 175 VGIAPPK|GV 0.074 . LdBPK_030520.1 187 GPPGTGK|TL 0.061 . LdBPK_030520.1 192 GKTLLAK|AI 0.072 . LdBPK_030520.1 204 VDAAFLK|IV 0.080 . LdBPK_030520.1 213 ASSIVDK|YI 0.120 . LdBPK_030520.1 220 YIGESAR|VI 0.103 . LdBPK_030520.1 223 ESARVIR|EM 0.325 . LdBPK_030520.1 230 EMFAYAR|EH 0.086 . LdBPK_030520.1 248 VDAIGSK|RI 0.060 . LdBPK_030520.1 249 DAIGSKR|IE 0.163 . LdBPK_030520.1 257 EGSSSDR|EI 0.102 . LdBPK_030520.1 261 SDREIQR|TL 0.116 . LdBPK_030520.1 275 QMDGFDK|LG 0.057 . LdBPK_030520.1 278 GFDKLGK|VK 0.054 . LdBPK_030520.1 280 DKLGKVK|VI 0.062 . LdBPK_030520.1 287 VIMATNR|PD 0.072 . LdBPK_030520.1 297 LDAALMR|PG 0.081 . LdBPK_030520.1 300 ALMRPGR|LD 0.260 . LdBPK_030520.1 303 RPGRLDR|KI 0.352 . LdBPK_030520.1 304 PGRLDRK|IE 0.069 . LdBPK_030520.1 315 LPNEAGR|LD 0.094 . LdBPK_030520.1 320 GRLDILR|IH 0.101 . LdBPK_030520.1 325 LRIHSAK|IT 0.093 . LdBPK_030520.1 328 HSAKITK|KG 0.069 . LdBPK_030520.1 329 SAKITKK|GD 0.136 . LdBPK_030520.1 339 DFESVVK|LS 0.056 . LdBPK_030520.1 350 FNGADLR|NV 0.140 . LdBPK_030520.1 362 AGMFAIR|AG 0.087 . LdBPK_030520.1 365 FAIRAGR|DY 0.241 . LdBPK_030520.1 375 ENDDFNK|AV 0.086 . LdBPK_030520.1 378 DFNKAVR|KV 0.116 . LdBPK_030520.1 379 FNKAVRK|VA 0.110 . LdBPK_030520.1 384 RKVADMK|RL 0.071 . LdBPK_030520.1 385 KVADMKR|LE 0.187 . ____________________________^_________________

  • Fasta :-

    >LdBPK_030520.1 ATGCAGAGCAACGCCCCCTTCGACCCGGAGCGCGAGGCGCTGCGCAACGAAGCCATCAAG AAGACAGTGGAGCGCAACGTCACGCAGGCTCGCTTGAAGAAGGTGAACGACGACGTCAAG CTGCAGCAGCGTGAGCTGGACAAGGTGGAGGATCAAGTCAACGCCCTCCTCAGCATTGGC CATTACGTGGGTGAAGTGCTCAAGCGCGTCGATGAGGAGCGCTTCATCGTGAAGAGCATC AGCGGTGCGCGTCACCTCGTCGGCTACCGCAAGAGCATCAAGCCGGAGAAGCTCAAGTTC GGCGCTCGTGTCGCGCTGGAAATTACGACCTTCACGATCGTGAAGGTGCTGCCGCGCGAG GTGGACCCGCAGGTGTACAGCATGCAGTACATGTCCAGTGACAAGGATGTGTCCTTCCAG GACATTGGTGGGCTGCAGCCGCAGATGCGTCAGATGCGCGAAGTGATTGAGCTTCCCCTG ACGAACCCGGAACTGTTCGTGCGCGTCGGTATTGCGCCGCCGAAGGGCGTACTGCTGTAC GGGCCGCCCGGCACCGGCAAGACGCTGCTGGCCAAGGCCATTGCCGCGAACGTGGATGCC GCGTTCCTCAAGATCGTCGCCTCTTCCATTGTCGACAAGTACATTGGCGAGTCCGCCCGC GTCATCCGCGAGATGTTCGCCTACGCGCGTGAGCATGAGCCGTGCATCATCTTCATTGAT GAGGTGGATGCCATCGGCAGCAAGCGTATCGAGGGCTCGTCCTCCGATCGCGAAATACAG CGCACACTTATGGAGCTGCTCAACCAGATGGACGGCTTTGACAAGCTAGGCAAGGTGAAG GTGATCATGGCGACGAACCGGCCCGACACGCTCGATGCGGCGCTGATGCGGCCTGGCCGC CTCGACCGCAAGATCGAGATCCCGTTGCCGAACGAGGCGGGGCGGCTCGATATTCTCCGC ATTCACTCGGCGAAGATAACGAAAAAGGGAGACATCGACTTCGAGAGCGTCGTGAAGCTG TCGGAGGGCTTCAACGGTGCTGATCTACGCAACGTGTGCACGGAGGCCGGCATGTTCGCC ATCCGCGCCGGCCGAGACTACGTCGAGAACGACGACTTTAACAAGGCCGTCCGCAAGGTG GCTGATATGAAGCGGCTGGAGGGTACGGCGCACCAGTACTCAGACCAGTAG
  • Download Fasta

  • Fasta :-

    MQSNAPFDPEREALRNEAIKKTVERNVTQARLKKVNDDVKLQQRELDKVEDQVNALLSIG HYVGEVLKRVDEERFIVKSISGARHLVGYRKSIKPEKLKFGARVALEITTFTIVKVLPRE VDPQVYSMQYMSSDKDVSFQDIGGLQPQMRQMREVIELPLTNPELFVRVGIAPPKGVLLY GPPGTGKTLLAKAIAANVDAAFLKIVASSIVDKYIGESARVIREMFAYAREHEPCIIFID EVDAIGSKRIEGSSSDREIQRTLMELLNQMDGFDKLGKVKVIMATNRPDTLDAALMRPGR LDRKIEIPLPNEAGRLDILRIHSAKITKKGDIDFESVVKLSEGFNGADLRNVCTEAGMFA IRAGRDYVENDDFNKAVRKVADMKRLEGTAHQYSDQ

  • title: ATP binding site
  • coordinates: P182,P183,G184,T185,G186,K187,T188,L189,D240,N286
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_030520.1255 SEGSSSDREI0.995unspLdBPK_030520.1323 SLRIHSAKIT0.994unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India