LdBPK_060140.1 | proteasome beta 6 subunit, putative

_IDPredictionOTHERSPmTPCS_Position
LdBPK_060140.1OTHER0.9995220.0001020.000376
No Results

  • Fasta :-

    >LdBPK_060140.1 MIEDHAEYGHNHYPQKLASSTLTLPKQGAKQQQWSPYQDNGGTTAAIAGKDFVILAGDTR LNGDYCLHSRHDQSKIFQLTPYTYMASNGMQADRLQLQQMLKYRVKWYQYNNGGRVPPTK AIAQLMSTMLYHRRFFPYYTFNMVVGLDEEGHGVCYSYDAVGSTEPFLYGTRGSAASFLE PVLDCLINRQHMTAQAPPEMTKEETLAMLKNAFTGAAERDIYTGDSVSFFIITKDGVQRE SFELRKD
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_060140.1.fa Sequence name : LdBPK_060140 Sequence length : 247 VALUES OF COMPUTED PARAMETERS Coef20 : 2.587 CoefTot : 0.000 ChDiff : -2 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.594 0.976 -0.003 0.476 MesoH : -0.469 0.130 -0.334 0.197 MuHd_075 : 6.007 5.954 3.127 1.992 MuHd_095 : 31.577 20.254 8.588 6.442 MuHd_100 : 19.409 13.874 5.570 4.089 MuHd_105 : 11.012 5.371 2.187 1.293 Hmax_075 : -6.183 -1.838 -3.615 1.540 Hmax_095 : 5.425 4.725 -0.646 3.675 Hmax_100 : -3.400 1.700 -2.996 2.720 Hmax_105 : -3.300 -2.917 -4.869 1.130 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9667 0.0333 DFMC : 0.9848 0.0152
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 247 LdBPK_060140.1 MIEDHAEYGHNHYPQKLASSTLTLPKQGAKQQQWSPYQDNGGTTAAIAGKDFVILAGDTRLNGDYCLHSRHDQSKIFQLT 80 PYTYMASNGMQADRLQLQQMLKYRVKWYQYNNGGRVPPTKAIAQLMSTMLYHRRFFPYYTFNMVVGLDEEGHGVCYSYDA 160 VGSTEPFLYGTRGSAASFLEPVLDCLINRQHMTAQAPPEMTKEETLAMLKNAFTGAAERDIYTGDSVSFFIITKDGVQRE 240 SFELRKD 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ....... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_060140.1 16 HNHYPQK|LA 0.084 . LdBPK_060140.1 26 STLTLPK|QG 0.065 . LdBPK_060140.1 30 LPKQGAK|QQ 0.067 . LdBPK_060140.1 50 TAAIAGK|DF 0.071 . LdBPK_060140.1 60 ILAGDTR|LN 0.092 . LdBPK_060140.1 70 DYCLHSR|HD 0.084 . LdBPK_060140.1 75 SRHDQSK|IF 0.076 . LdBPK_060140.1 94 NGMQADR|LQ 0.078 . LdBPK_060140.1 102 QLQQMLK|YR 0.057 . LdBPK_060140.1 104 QQMLKYR|VK 0.095 . LdBPK_060140.1 106 MLKYRVK|WY 0.066 . LdBPK_060140.1 115 QYNNGGR|VP 0.072 . LdBPK_060140.1 120 GRVPPTK|AI 0.095 . LdBPK_060140.1 133 STMLYHR|RF 0.075 . LdBPK_060140.1 134 TMLYHRR|FF 0.147 . LdBPK_060140.1 172 PFLYGTR|GS 0.071 . LdBPK_060140.1 189 LDCLINR|QH 0.086 . LdBPK_060140.1 202 APPEMTK|EE 0.057 . LdBPK_060140.1 210 ETLAMLK|NA 0.058 . LdBPK_060140.1 219 FTGAAER|DI 0.112 . LdBPK_060140.1 234 SFFIITK|DG 0.062 . LdBPK_060140.1 239 TKDGVQR|ES 0.096 . LdBPK_060140.1 245 RESFELR|KD 0.103 . LdBPK_060140.1 246 ESFELRK|D- 0.091 . ____________________________^_________________

  • Fasta :-

    >LdBPK_060140.1 ATGATCGAGGACCACGCCGAGTACGGCCACAACCACTACCCCCAGAAGCTGGCCAGCTCT ACCCTCACCCTACCGAAGCAGGGAGCGAAGCAGCAGCAGTGGAGCCCCTACCAGGACAAT GGAGGCACGACGGCCGCTATCGCTGGGAAGGACTTCGTCATCCTCGCTGGTGACACTCGT CTGAATGGTGACTACTGCCTTCACAGCCGCCATGATCAGAGCAAGATCTTCCAACTGACG CCGTACACGTACATGGCGAGCAACGGCATGCAGGCGGACCGGCTGCAGCTCCAGCAGATG CTCAAGTACCGCGTCAAGTGGTACCAGTACAACAACGGCGGTAGGGTGCCGCCGACCAAG GCAATTGCGCAGCTCATGTCCACGATGCTGTACCACCGTCGCTTCTTCCCTTACTACACG TTCAATATGGTCGTTGGTCTGGATGAGGAGGGGCACGGCGTGTGCTACAGCTACGACGCC GTCGGCTCAACGGAGCCCTTCCTGTACGGTACCCGGGGTAGCGCGGCCAGCTTCTTGGAG CCGGTGCTCGACTGCCTTATCAACCGCCAACATATGACCGCCCAGGCACCGCCGGAGATG ACAAAGGAGGAGACGCTGGCGATGCTCAAGAACGCCTTCACCGGCGCAGCCGAGCGCGAC ATTTACACCGGCGACTCCGTCTCCTTCTTTATCATCACGAAGGACGGCGTGCAGCGGGAG AGCTTCGAGCTGCGCAAGGACTGA
  • Download Fasta

  • Fasta :-

    MIEDHAEYGHNHYPQKLASSTLTLPKQGAKQQQWSPYQDNGGTTAAIAGKDFVILAGDTR LNGDYCLHSRHDQSKIFQLTPYTYMASNGMQADRLQLQQMLKYRVKWYQYNNGGRVPPTK AIAQLMSTMLYHRRFFPYYTFNMVVGLDEEGHGVCYSYDAVGSTEPFLYGTRGSAASFLE PVLDCLINRQHMTAQAPPEMTKEETLAMLKNAFTGAAERDIYTGDSVSFFIITKDGVQRE SFELRKD

  • title: active site
  • coordinates: G42,D58,R60,K75,S174,D220,T223,G224
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_060140.169 SYCLHSRHDQ0.994unspLdBPK_060140.1201 TPPEMTKEET0.991unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India