LdBPK_070040.1 | hypothetical protein, conserved

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_IDPredictionOTHERSPmTPCS_Position
LdBPK_070040.1OTHER0.7581980.0160880.225714
No Results

  • Fasta :-

    >LdBPK_070040.1 MIVAHKLICTCKLHVKRTAAHWSGAVTKNSCNAIDYGARLVFKICKIAEGIVRNGESNHV FSASSTIMSMSVIHGGIAIKTIPVHCIFNYEFCNPPRMAHVDSQQCAPGYVASDPLPETK ECSGAGIVIENLLSVPSLHDAHEKKMPSALVSAMTGGRDMRKLGGSTEADQYALIGVPLI VYGPGSIKVANQENELVPKKHLNGCGKKRIMNITRKNHDMQSHMCAAR
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_070040.1.fa Sequence name : LdBPK_070040 Sequence length : 228 VALUES OF COMPUTED PARAMETERS Coef20 : 4.526 CoefTot : -0.711 ChDiff : 9 ZoneTo : 48 KR : 8 DE : 1 CleavSite : 19 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.624 1.476 0.175 0.622 MesoH : -0.164 0.436 -0.248 0.246 MuHd_075 : 29.807 13.901 9.302 5.578 MuHd_095 : 47.802 28.378 14.250 10.019 MuHd_100 : 49.897 30.924 15.950 10.483 MuHd_105 : 48.730 32.734 16.553 10.678 Hmax_075 : 8.600 9.683 1.276 3.453 Hmax_095 : 15.225 16.188 5.879 5.548 Hmax_100 : 15.600 17.600 5.879 6.720 Hmax_105 : 16.800 22.900 7.632 7.500 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0929 0.9071 DFMC : 0.1079 0.8921 This protein is probably imported in mitochondria. f(Ser) = 0.0417 f(Arg) = 0.0417 CMi = 0.32468 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 228 LdBPK_070040.1 MIVAHKLICTCKLHVKRTAAHWSGAVTKNSCNAIDYGARLVFKICKIAEGIVRNGESNHVFSASSTIMSMSVIHGGIAIK 80 TIPVHCIFNYEFCNPPRMAHVDSQQCAPGYVASDPLPETKECSGAGIVIENLLSVPSLHDAHEKKMPSALVSAMTGGRDM 160 RKLGGSTEADQYALIGVPLIVYGPGSIKVANQENELVPKKHLNGCGKKRIMNITRKNHDMQSHMCAAR 240 ................................................................................ 80 ................................................................................ 160 .................................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_070040.1 6 -MIVAHK|LI 0.065 . LdBPK_070040.1 12 KLICTCK|LH 0.058 . LdBPK_070040.1 16 TCKLHVK|RT 0.064 . LdBPK_070040.1 17 CKLHVKR|TA 0.178 . LdBPK_070040.1 28 WSGAVTK|NS 0.079 . LdBPK_070040.1 39 AIDYGAR|LV 0.103 . LdBPK_070040.1 43 GARLVFK|IC 0.076 . LdBPK_070040.1 46 LVFKICK|IA 0.080 . LdBPK_070040.1 53 IAEGIVR|NG 0.076 . LdBPK_070040.1 80 HGGIAIK|TI 0.057 . LdBPK_070040.1 97 EFCNPPR|MA 0.105 . LdBPK_070040.1 120 DPLPETK|EC 0.069 . LdBPK_070040.1 144 LHDAHEK|KM 0.065 . LdBPK_070040.1 145 HDAHEKK|MP 0.148 . LdBPK_070040.1 158 SAMTGGR|DM 0.113 . LdBPK_070040.1 161 TGGRDMR|KL 0.388 . LdBPK_070040.1 162 GGRDMRK|LG 0.089 . LdBPK_070040.1 188 YGPGSIK|VA 0.062 . LdBPK_070040.1 199 ENELVPK|KH 0.058 . LdBPK_070040.1 200 NELVPKK|HL 0.094 . LdBPK_070040.1 207 HLNGCGK|KR 0.064 . LdBPK_070040.1 208 LNGCGKK|RI 0.095 . LdBPK_070040.1 209 NGCGKKR|IM 0.178 . LdBPK_070040.1 215 RIMNITR|KN 0.119 . LdBPK_070040.1 216 IMNITRK|NH 0.098 . LdBPK_070040.1 228 SHMCAAR|-- 0.110 . ____________________________^_________________

  • Fasta :-

    >LdBPK_070040.1 ATGATCGTGGCGCACAAGCTTATCTGCACGTGCAAGCTACACGTGAAGAGGACCGCCGCC CACTGGTCAGGCGCGGTGACGAAGAACAGCTGCAACGCGATTGACTACGGTGCCAGGCTT GTCTTCAAGATCTGCAAGATTGCAGAGGGCATCGTGCGAAATGGAGAGAGCAACCACGTC TTCAGTGCGTCGAGCACTATCATGTCCATGAGTGTGATTCACGGCGGTATCGCTATTAAA ACGATTCCCGTCCATTGCATTTTCAACTATGAGTTCTGCAACCCACCTCGAATGGCGCAT GTAGATAGCCAACAATGCGCTCCTGGCTACGTTGCCAGCGATCCGCTTCCGGAGACAAAG GAGTGCAGTGGTGCTGGCATAGTCATCGAAAACCTTCTCTCCGTCCCCTCGCTCCACGAC GCTCACGAAAAAAAAATGCCTTCTGCGCTGGTTAGCGCTATGACTGGTGGCCGGGATATG CGAAAACTTGGTGGCAGCACGGAGGCTGACCAGTACGCTCTTATCGGTGTTCCTCTGATC GTCTACGGCCCTGGCAGTATCAAAGTTGCGAACCAGGAGAATGAGCTTGTCCCGAAGAAG CATTTGAATGGCTGTGGGAAGAAACGGATCATGAACATTACGCGCAAGAATCACGATATG CAGTCCCACATGTGTGCGGCCCGATAA
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  • Fasta :-

    MIVAHKLICTCKLHVKRTAAHWSGAVTKNSCNAIDYGARLVFKICKIAEGIVRNGESNHV FSASSTIMSMSVIHGGIAIKTIPVHCIFNYEFCNPPRMAHVDSQQCAPGYVASDPLPETK ECSGAGIVIENLLSVPSLHDAHEKKMPSALVSAMTGGRDMRKLGGSTEADQYALIGVPLI VYGPGSIKVANQENELVPKKHLNGCGKKRIMNITRKNHDMQSHMCAAR

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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India