LdBPK_071300.1 | proteasome regulatory non-ATP-ase subunit, putative

UniProt_ID: E9B9B7

Computed_GO_Component_IDs:
Computed_GO_Components:
Computed_GO_Function_IDs:
Computed_GO_Functions:
Computed_GO_Process_IDs:
Computed_GO_Processes:
Curated_GO_Component_IDs: GO:0097014 GO:0005737 GO:0005654 GO:0000502 GO:0005838
Curated_GO_Components: ciliary plasm cytoplasm nucleoplasm proteasome complex proteasome regulatory particle
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes: cell growth ubiquitin-dependent protein catabolic process

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	LdBPK_071300.1	OTHER	0.999849	0.000149	0.000002

No Results

Fasta :-
>LdBPK_071300.1 MVEACFLCLDSTEYMRNGDQYPTRMMAEQDAACLLANAKLQANAENTLGFLTTGGNACTV YETLTNNVDAIMTSIGSIPVNGKRCNFSSGLQIASLALSHRTNSRAEKRIVAFVGSPIGE TAAELEALAKKLRKDDVAVDVVAFGVESNVELLQAFVKKVSKKENSRFLAVAARENLTDK LMSNAILLGEDLPEGAEGGGANMSGFGVDPNMDPELAMALRLSMEDEMQRQAAAAAAAAS SAAPESAPASGSAATPAAPAAPAAAPVVDEDELSYENMSEEEMMRRAIALSLQDSAQGAS DTTSPPSAPQPATTSETCRNEEENEDDFAKGVEDALEKEDEENSS
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_071300.1.fa Sequence name : LdBPK_071300 Sequence length : 345 VALUES OF COMPUTED PARAMETERS Coef20 : 3.705 CoefTot : 0.000 ChDiff : -29 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.212 1.412 0.108 0.502 MesoH : -0.246 0.298 -0.281 0.200 MuHd_075 : 12.606 6.885 3.780 2.115 MuHd_095 : 14.524 6.016 5.308 1.887 MuHd_100 : 30.869 14.274 9.716 2.673 MuHd_105 : 41.456 19.263 12.539 4.712 Hmax_075 : 4.550 6.183 0.195 2.485 Hmax_095 : 3.400 7.300 1.806 2.210 Hmax_100 : 14.800 10.700 3.949 3.590 Hmax_105 : 17.400 16.100 5.145 4.010 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9898 0.0102 DFMC : 0.9678 0.0322

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 345 LdBPK_071300.1 MVEACFLCLDSTEYMRNGDQYPTRMMAEQDAACLLANAKLQANAENTLGFLTTGGNACTVYETLTNNVDAIMTSIGSIPV 80 NGKRCNFSSGLQIASLALSHRTNSRAEKRIVAFVGSPIGETAAELEALAKKLRKDDVAVDVVAFGVESNVELLQAFVKKV 160 SKKENSRFLAVAARENLTDKLMSNAILLGEDLPEGAEGGGANMSGFGVDPNMDPELAMALRLSMEDEMQRQAAAAAAAAS 240 SAAPESAPASGSAATPAAPAAPAAAPVVDEDELSYENMSEEEMMRRAIALSLQDSAQGASDTTSPPSAPQPATTSETCRN 320 EEENEDDFAKGVEDALEKEDEENSS 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ......................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_071300.1 16 DSTEYMR|NG 0.080 . LdBPK_071300.1 24 GDQYPTR|MM 0.105 . LdBPK_071300.1 39 CLLANAK|LQ 0.063 . LdBPK_071300.1 83 SIPVNGK|RC 0.055 . LdBPK_071300.1 84 IPVNGKR|CN 0.186 . LdBPK_071300.1 101 SLALSHR|TN 0.128 . LdBPK_071300.1 105 SHRTNSR|AE 0.089 . LdBPK_071300.1 108 TNSRAEK|RI 0.180 . LdBPK_071300.1 109 NSRAEKR|IV 0.303 . LdBPK_071300.1 130 ELEALAK|KL 0.064 . LdBPK_071300.1 131 LEALAKK|LR 0.074 . LdBPK_071300.1 133 ALAKKLR|KD 0.105 . LdBPK_071300.1 134 LAKKLRK|DD 0.098 . LdBPK_071300.1 158 LLQAFVK|KV 0.111 . LdBPK_071300.1 159 LQAFVKK|VS 0.119 . LdBPK_071300.1 162 FVKKVSK|KE 0.056 . LdBPK_071300.1 163 VKKVSKK|EN 0.134 . LdBPK_071300.1 167 SKKENSR|FL 0.094 . LdBPK_071300.1 174 FLAVAAR|EN 0.087 . LdBPK_071300.1 180 RENLTDK|LM 0.068 . LdBPK_071300.1 221 ELAMALR|LS 0.091 . LdBPK_071300.1 230 MEDEMQR|QA 0.090 . LdBPK_071300.1 285 SEEEMMR|RA 0.083 . LdBPK_071300.1 286 EEEMMRR|AI 0.128 . LdBPK_071300.1 319 TTSETCR|NE 0.144 . LdBPK_071300.1 330 NEDDFAK|GV 0.119 . LdBPK_071300.1 338 VEDALEK|ED 0.054 . ____________________________^_________________

Fasta :-
>LdBPK_071300.1 ATGGTTGAGGCGTGCTTCCTGTGCTTGGACTCCACGGAGTACATGCGCAATGGGGATCAG TACCCCACTCGCATGATGGCGGAGCAGGACGCGGCCTGCCTGCTGGCGAACGCGAAGCTG CAAGCGAACGCTGAAAACACGCTTGGCTTCCTCACGACAGGCGGAAATGCGTGTACGGTG TACGAAACCCTCACAAACAATGTGGACGCTATCATGACCTCGATCGGCAGCATCCCCGTC AACGGAAAGCGCTGCAACTTCAGCTCTGGTCTGCAAATCGCGTCGTTGGCTCTCAGTCAC CGCACCAACTCCCGCGCTGAAAAGCGCATTGTCGCCTTCGTTGGAAGCCCGATCGGGGAG ACGGCAGCGGAGCTGGAGGCGCTGGCGAAAAAGCTGCGCAAAGACGACGTGGCGGTCGAC GTGGTGGCGTTCGGCGTGGAGTCGAACGTGGAGCTGCTGCAGGCCTTTGTGAAGAAGGTA TCCAAGAAGGAGAACTCGCGTTTCCTGGCGGTGGCCGCGCGCGAGAACCTGACAGACAAA CTGATGAGCAACGCCATTCTCCTTGGCGAGGACCTTCCCGAGGGGGCCGAGGGCGGTGGC GCCAACATGAGCGGCTTTGGCGTGGACCCCAACATGGATCCGGAGCTAGCCATGGCTCTC CGCCTCTCCATGGAGGACGAGATGCAGCGCCAGGCGGCTGCGGCCGCTGCTGCGGCCTCA TCTGCAGCCCCCGAAAGCGCACCGGCTTCTGGCAGCGCTGCCACTCCTGCTGCTCCGGCA GCCCCAGCAGCGGCGCCGGTGGTGGACGAGGATGAGCTGAGCTACGAGAACATGTCGGAG GAGGAGATGATGCGCCGGGCCATCGCGCTCTCACTGCAGGATTCCGCGCAGGGCGCTTCA GACACGACGTCCCCGCCATCGGCGCCGCAGCCTGCCACTACCTCGGAAACGTGCAGGAAT GAGGAGGAGAACGAGGACGACTTTGCGAAAGGCGTCGAGGACGCCTTGGAGAAGGAGGAT GAGGAGAACAGCTCGTGA
Download Fasta

Fasta :-

MVEACFLCLDSTEYMRNGDQYPTRMMAEQDAACLLANAKLQANAENTLGFLTTGGNACTV YETLTNNVDAIMTSIGSIPVNGKRCNFSSGLQIASLALSHRTNSRAEKRIVAFVGSPIGE TAAELEALAKKLRKDDVAVDVVAFGVESNVELLQAFVKKVSKKENSRFLAVAARENLTDK LMSNAILLGEDLPEGAEGGGANMSGFGVDPNMDPELAMALRLSMEDEMQRQAAAAAAAAS SAAPESAPASGSAATPAAPAAPAAAPVVDEDELSYENMSEEEMMRRAIALSLQDSAQGAS DTTSPPSAPQPATTSETCRNEEENEDDFAKGVEDALEKEDEENSS

Ku80 subunit N-terminal domain

title: metal ion-dependent adhesion site (MIDAS)
coordinates: D10,C85,G115

No Results

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	LdBPK_071300.1	223 S	ALRLSMEDE	0.998	unsp	LdBPK_071300.1	223 S	ALRLSMEDE	0.998	unsp	LdBPK_071300.1	223 S	ALRLSMEDE	0.998	unsp	LdBPK_071300.1	279 S	YENMSEEEM	0.996	unsp	LdBPK_071300.1	104 S	HRTNSRAEK	0.992	unsp	LdBPK_071300.1	161 S	VKKVSKKEN	0.998	unsp

LdBPK_071300.1 | proteasome regulatory non-ATP-ase subunit, putative

ID's

UniProt_ID: E9B9B7

GEO Functions

Computed_GO_Component_IDs:

Computed_GO_Components:

Computed_GO_Function_IDs:

Computed_GO_Functions:

Computed_GO_Process_IDs:

Computed_GO_Processes:

Curated_GO_Component_IDs: GO:0097014 GO:0005737 GO:0005654 GO:0000502 GO:0005838

Curated_GO_Components: ciliary plasm cytoplasm nucleoplasm proteasome complex proteasome regulatory particle

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes: cell growth ubiquitin-dependent protein catabolic process

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Ku80 subunit N-terminal domain

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India