LdBPK_080240.1 | ABC1 family, putative

  • Computed_GO_Component_IDs:        

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  • Computed_GO_Function_IDs:        

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  • Curated_GO_Component_IDs:        

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No Results
No Results

  • Fasta :-

    >LdBPK_080240.1 MTFRFSRAARYGAAAAGFMGASTVAILLPPRETIPPVLLPSRVLFEGIGRVGRCVYAGGQ IYCDYAFNVTQEDGQEQWNEVHRRCAERLVDLAERNGGLYVKAGQIFANMSHILPYQYCQ VMAVLQDAVVKRPYAEVVAVLEKDLGRPLGEVFSYIDPTPLAAASLAQVHRGRLRDEDVE VAVKVQYIDIAQRFNGDMRTISLMFAAASYFFPGYDFGQIIAKLNDTVAAELDFRIEGRN SDRAAADLRSCGWGERVVCPRIFWNYASRRVLVSQFIPDAVKVSDRAGIAAMGLNVKEVA TTFFEVIAFQIFRTGFFHGDPHAGNVLVHKLPDGKPQVVLLDFGLCAELNAAQRREISDI WTASTTHDTPKITEIARRYDCDDYELFASCFLQHPYEYFANSTSGRLNSPYALEKMRETV KHRMTDLNGIVAALPKEYALVLRSIMATKAINRELGEAANRPMCMLRYSLKTSHEDLPKI QFLVLMSKAWVSELYAWLLLRFTLWRHPELSEVLESSLQLSG
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_080240.1.fa Sequence name : LdBPK_080240 Sequence length : 522 VALUES OF COMPUTED PARAMETERS Coef20 : 4.668 CoefTot : -1.197 ChDiff : -1 ZoneTo : 63 KR : 7 DE : 2 CleavSite : 12 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.929 1.712 0.317 0.675 MesoH : -0.376 0.523 -0.241 0.289 MuHd_075 : 41.132 30.860 11.378 9.250 MuHd_095 : 46.959 26.295 10.981 11.041 MuHd_100 : 48.311 27.428 12.024 10.951 MuHd_105 : 46.933 33.209 12.883 11.148 Hmax_075 : 20.067 28.700 5.287 8.400 Hmax_095 : 14.613 19.863 4.438 6.563 Hmax_100 : 16.800 18.700 5.162 6.860 Hmax_105 : 16.800 18.700 3.783 6.860 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0832 0.9168 DFMC : 0.1096 0.8904 This protein is probably imported in mitochondria. f(Ser) = 0.0476 f(Arg) = 0.1111 CMi = 0.21112 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 522 LdBPK_080240.1 MTFRFSRAARYGAAAAGFMGASTVAILLPPRETIPPVLLPSRVLFEGIGRVGRCVYAGGQIYCDYAFNVTQEDGQEQWNE 80 VHRRCAERLVDLAERNGGLYVKAGQIFANMSHILPYQYCQVMAVLQDAVVKRPYAEVVAVLEKDLGRPLGEVFSYIDPTP 160 LAAASLAQVHRGRLRDEDVEVAVKVQYIDIAQRFNGDMRTISLMFAAASYFFPGYDFGQIIAKLNDTVAAELDFRIEGRN 240 SDRAAADLRSCGWGERVVCPRIFWNYASRRVLVSQFIPDAVKVSDRAGIAAMGLNVKEVATTFFEVIAFQIFRTGFFHGD 320 PHAGNVLVHKLPDGKPQVVLLDFGLCAELNAAQRREISDIWTASTTHDTPKITEIARRYDCDDYELFASCFLQHPYEYFA 400 NSTSGRLNSPYALEKMRETVKHRMTDLNGIVAALPKEYALVLRSIMATKAINRELGEAANRPMCMLRYSLKTSHEDLPKI 480 QFLVLMSKAWVSELYAWLLLRFTLWRHPELSEVLESSLQLSG 560 ....................................................P........................... 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 .......................................... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LdBPK_080240.1 4 ---MTFR|FS 0.120 . LdBPK_080240.1 7 MTFRFSR|AA 0.383 . LdBPK_080240.1 10 RFSRAAR|YG 0.429 . LdBPK_080240.1 31 AILLPPR|ET 0.070 . LdBPK_080240.1 42 PVLLPSR|VL 0.081 . LdBPK_080240.1 50 LFEGIGR|VG 0.068 . LdBPK_080240.1 53 GIGRVGR|CV 0.602 *ProP* LdBPK_080240.1 83 QWNEVHR|RC 0.090 . LdBPK_080240.1 84 WNEVHRR|CA 0.249 . LdBPK_080240.1 88 HRRCAER|LV 0.197 . LdBPK_080240.1 95 LVDLAER|NG 0.076 . LdBPK_080240.1 102 NGGLYVK|AG 0.060 . LdBPK_080240.1 131 LQDAVVK|RP 0.062 . LdBPK_080240.1 132 QDAVVKR|PY 0.248 . LdBPK_080240.1 143 VVAVLEK|DL 0.077 . LdBPK_080240.1 147 LEKDLGR|PL 0.115 . LdBPK_080240.1 171 SLAQVHR|GR 0.100 . LdBPK_080240.1 173 AQVHRGR|LR 0.084 . LdBPK_080240.1 175 VHRGRLR|DE 0.104 . LdBPK_080240.1 184 DVEVAVK|VQ 0.053 . LdBPK_080240.1 193 YIDIAQR|FN 0.113 . LdBPK_080240.1 199 RFNGDMR|TI 0.109 . LdBPK_080240.1 223 FGQIIAK|LN 0.067 . LdBPK_080240.1 235 AAELDFR|IE 0.073 . LdBPK_080240.1 239 DFRIEGR|NS 0.098 . LdBPK_080240.1 243 EGRNSDR|AA 0.112 . LdBPK_080240.1 249 RAAADLR|SC 0.232 . LdBPK_080240.1 256 SCGWGER|VV 0.104 . LdBPK_080240.1 261 ERVVCPR|IF 0.094 . LdBPK_080240.1 269 FWNYASR|RV 0.108 . LdBPK_080240.1 270 WNYASRR|VL 0.133 . LdBPK_080240.1 282 FIPDAVK|VS 0.057 . LdBPK_080240.1 286 AVKVSDR|AG 0.096 . LdBPK_080240.1 297 AMGLNVK|EV 0.069 . LdBPK_080240.1 313 IAFQIFR|TG 0.078 . LdBPK_080240.1 330 GNVLVHK|LP 0.069 . LdBPK_080240.1 335 HKLPDGK|PQ 0.058 . LdBPK_080240.1 354 ELNAAQR|RE 0.075 . LdBPK_080240.1 355 LNAAQRR|EI 0.293 . LdBPK_080240.1 371 TTHDTPK|IT 0.091 . LdBPK_080240.1 377 KITEIAR|RY 0.073 . LdBPK_080240.1 378 ITEIARR|YD 0.143 . LdBPK_080240.1 406 ANSTSGR|LN 0.126 . LdBPK_080240.1 415 SPYALEK|MR 0.074 . LdBPK_080240.1 417 YALEKMR|ET 0.099 . LdBPK_080240.1 421 KMRETVK|HR 0.067 . LdBPK_080240.1 423 RETVKHR|MT 0.107 . LdBPK_080240.1 436 IVAALPK|EY 0.067 . LdBPK_080240.1 443 EYALVLR|SI 0.142 . LdBPK_080240.1 449 RSIMATK|AI 0.077 . LdBPK_080240.1 453 ATKAINR|EL 0.094 . LdBPK_080240.1 461 LGEAANR|PM 0.073 . LdBPK_080240.1 467 RPMCMLR|YS 0.093 . LdBPK_080240.1 471 MLRYSLK|TS 0.071 . LdBPK_080240.1 479 SHEDLPK|IQ 0.068 . LdBPK_080240.1 488 FLVLMSK|AW 0.060 . LdBPK_080240.1 501 YAWLLLR|FT 0.082 . LdBPK_080240.1 506 LRFTLWR|HP 0.104 . ____________________________^_________________

  • Fasta :-

    >LdBPK_080240.1 ATGACTTTTCGGTTTAGCCGAGCAGCGCGTTATGGCGCAGCGGCAGCAGGCTTCATGGGG GCCAGCACGGTTGCCATTCTCCTGCCGCCAAGGGAGACGATCCCGCCGGTGCTGCTGCCG TCGCGTGTCCTGTTCGAAGGCATCGGCCGCGTCGGGCGGTGCGTGTACGCAGGTGGGCAG ATCTACTGCGACTACGCCTTCAACGTGACGCAGGAGGATGGGCAGGAGCAGTGGAACGAG GTGCACCGGCGGTGCGCGGAGCGGCTGGTCGATCTGGCAGAGAGAAACGGGGGGCTGTAC GTGAAGGCGGGGCAGATCTTCGCGAACATGAGCCACATCCTGCCCTATCAGTACTGCCAA GTGATGGCGGTGCTGCAGGATGCGGTGGTGAAGCGGCCCTACGCGGAAGTTGTAGCCGTG CTGGAAAAGGACTTGGGGCGCCCGCTCGGCGAAGTGTTTTCGTACATCGACCCGACCCCG CTGGCAGCCGCGTCGCTGGCGCAGGTGCACCGTGGCCGTCTGCGCGACGAGGACGTGGAG GTGGCAGTCAAGGTGCAGTACATCGACATTGCGCAGCGGTTCAACGGTGACATGCGCACC ATCTCCCTCATGTTTGCCGCAGCCAGCTACTTCTTTCCTGGCTACGACTTTGGCCAGATC ATCGCGAAGCTGAACGACACCGTCGCGGCCGAGCTCGACTTCCGGATCGAGGGCCGGAAT AGTGACCGGGCCGCGGCGGATCTGCGGTCCTGCGGATGGGGGGAGCGCGTCGTGTGCCCA CGCATCTTCTGGAATTACGCCAGCAGGCGCGTGCTCGTCTCGCAGTTCATTCCAGATGCG GTGAAGGTATCGGACCGCGCAGGCATTGCGGCGATGGGGCTCAACGTGAAGGAGGTGGCA ACGACGTTCTTCGAGGTCATCGCCTTCCAGATCTTCCGCACCGGCTTCTTCCATGGAGAC CCGCACGCCGGCAACGTCCTCGTGCACAAGCTGCCAGATGGGAAGCCACAGGTAGTCCTG CTGGACTTTGGCCTGTGTGCGGAGCTCAATGCGGCTCAACGCCGCGAGATCAGCGACATC TGGACGGCCTCCACCACCCACGACACTCCCAAGATCACCGAGATTGCGCGCCGTTACGAC TGCGACGACTACGAGCTGTTCGCCTCCTGCTTCCTGCAGCACCCGTATGAGTACTTCGCG AACAGCACCAGCGGCCGGCTCAATAGCCCGTACGCGCTAGAGAAGATGCGGGAAACCGTG AAGCATCGCATGACGGATCTGAACGGCATCGTAGCAGCACTGCCGAAGGAGTATGCCCTC GTGCTGCGCAGCATCATGGCCACCAAGGCCATCAATCGTGAGCTCGGCGAGGCGGCGAAC CGCCCGATGTGCATGCTGCGCTACTCCCTCAAGACCTCTCACGAGGACCTCCCCAAGATC CAGTTCCTGGTATTGATGTCCAAGGCGTGGGTTTCAGAGTTGTACGCGTGGCTGTTGCTG CGGTTCACGCTGTGGCGACACCCGGAGCTGTCTGAGGTGTTGGAGAGCTCGCTGCAGCTG AGCGGCTAG
  • Download Fasta

  • Fasta :-

  • title: putative ATP binding site
  • coordinates: L174,R175,D176,E177,D178,V181,A191,R193,E255,S274,Q275,F276,I277,D320,G324,N325,L327,L341,D342
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_080240.1473 SSLKTSHEDL0.997unspLdBPK_080240.1473 SSLKTSHEDL0.997unspLdBPK_080240.1473 SSLKTSHEDL0.997unspLdBPK_080240.1241 SEGRNSDRAA0.996unspLdBPK_080240.1409 SGRLNSPYAL0.991unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India