LdBPK_080460.1 | signal peptidase type I, putative

_IDPredictionOTHERSPmTPCS_Position
LdBPK_080460.1OTHER0.9210840.0752460.003670
No Results

  • Fasta :-

    >LdBPK_080460.1 MREHIDTLLSLRIRDVVQQVVTISLFLSVVLVGWRGAAVITNCEASIVVVLSGSMEPGYH RGDVLLLHHRPEYPVEVGDIIVYTLPGQDIPIVHRVHRIHERAEDHKKLYLTKGDNNMND DRFLFHSGREWVEQDMIIGKTFAYVPRIGYLTIVFNESKVIKYVALALLGFFMLTSTQEL
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_080460.1.fa Sequence name : LdBPK_080460 Sequence length : 180 VALUES OF COMPUTED PARAMETERS Coef20 : 4.317 CoefTot : 0.135 ChDiff : -3 ZoneTo : 2 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.624 2.282 0.257 0.676 MesoH : -0.120 0.811 -0.195 0.344 MuHd_075 : 8.722 1.105 1.649 1.592 MuHd_095 : 32.047 26.912 8.913 7.448 MuHd_100 : 14.168 18.232 5.466 3.979 MuHd_105 : 9.215 5.768 1.976 0.877 Hmax_075 : -4.000 6.100 -3.494 2.710 Hmax_095 : 7.087 19.600 1.765 4.672 Hmax_100 : -6.100 13.200 -1.045 2.700 Hmax_105 : -5.700 8.900 -1.828 2.880 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9510 0.0490 DFMC : 0.9834 0.0166
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 180 LdBPK_080460.1 MREHIDTLLSLRIRDVVQQVVTISLFLSVVLVGWRGAAVITNCEASIVVVLSGSMEPGYHRGDVLLLHHRPEYPVEVGDI 80 IVYTLPGQDIPIVHRVHRIHERAEDHKKLYLTKGDNNMNDDRFLFHSGREWVEQDMIIGKTFAYVPRIGYLTIVFNESKV 160 IKYVALALLGFFMLTSTQEL 240 ................................................................................ 80 ................................................................................ 160 .................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_080460.1 2 -----MR|EH 0.093 . LdBPK_080460.1 12 DTLLSLR|IR 0.073 . LdBPK_080460.1 14 LLSLRIR|DV 0.248 . LdBPK_080460.1 35 VVLVGWR|GA 0.087 . LdBPK_080460.1 61 MEPGYHR|GD 0.077 . LdBPK_080460.1 70 VLLLHHR|PE 0.083 . LdBPK_080460.1 95 DIPIVHR|VH 0.080 . LdBPK_080460.1 98 IVHRVHR|IH 0.430 . LdBPK_080460.1 102 VHRIHER|AE 0.101 . LdBPK_080460.1 107 ERAEDHK|KL 0.065 . LdBPK_080460.1 108 RAEDHKK|LY 0.112 . LdBPK_080460.1 113 KKLYLTK|GD 0.065 . LdBPK_080460.1 122 NNMNDDR|FL 0.118 . LdBPK_080460.1 129 FLFHSGR|EW 0.097 . LdBPK_080460.1 140 QDMIIGK|TF 0.063 . LdBPK_080460.1 147 TFAYVPR|IG 0.087 . LdBPK_080460.1 159 IVFNESK|VI 0.058 . LdBPK_080460.1 162 NESKVIK|YV 0.111 . ____________________________^_________________

  • Fasta :-

    >LdBPK_080460.1 ATGCGCGAGCACATTGACACGCTGCTGTCCCTGCGCATCCGCGATGTCGTTCAACAAGTC GTCACTATCAGCCTCTTCCTGAGCGTCGTCCTCGTGGGCTGGCGCGGCGCGGCGGTGATC ACCAACTGCGAGGCGAGCATCGTCGTGGTGCTGAGCGGGAGTATGGAGCCTGGCTACCAT CGCGGCGATGTGCTCCTGCTGCACCATCGCCCCGAGTACCCGGTGGAGGTGGGCGACATC ATCGTCTACACGCTGCCGGGACAGGACATTCCTATTGTGCACCGCGTCCACCGCATCCAC GAGCGTGCCGAGGATCATAAAAAACTATACCTGACGAAGGGCGACAACAACATGAACGAC GACCGCTTTCTCTTCCATAGCGGGCGGGAGTGGGTGGAGCAGGACATGATTATCGGTAAG ACGTTTGCCTACGTGCCGCGCATCGGGTACTTGACCATCGTGTTTAACGAGTCGAAGGTT ATCAAGTACGTTGCGCTGGCTCTCTTGGGCTTCTTTATGCTGACCTCCACACAGGAGCTG TAA
  • Download Fasta

  • Fasta :-

    MREHIDTLLSLRIRDVVQQVVTISLFLSVVLVGWRGAAVITNCEASIVVVLSGSMEPGYH RGDVLLLHHRPEYPVEVGDIIVYTLPGQDIPIVHRVHRIHERAEDHKKLYLTKGDNNMND DRFLFHSGREWVEQDMIIGKTFAYVPRIGYLTIVFNESKVIKYVALALLGFFMLTSTQEL

  • title: Catalytic site
  • coordinates: S54,H94
No Results
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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India