LdBPK_090650.1 | cyclin 1

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0008236      

  • Computed_GO_Functions:  serine-type peptidase activity      

  • Computed_GO_Process_IDs:  GO:0006508      

  • Computed_GO_Processes:  proteolysis      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LdBPK_090650.1OTHER0.9901860.0052430.004571
No Results

  • Fasta :-

    >LdBPK_090650.1 MGAPHLNSIRACLAGSGHDAFSEPVTIDHLLSLVATPKTGVVSVAYVGTATYDLAESQAE QTSLLLQRGWTVRPIQVADPAVKAVNDGDAHFIQTAADIVLVSGGNTLYAVRRWEETGLA RLLKDAAARQVVMAGGSAGAICWFTSGHSDSADPATYLQPSLKRAALKMGLIPQDQISKT EAELADLSTSWSYIRVRGLNILPGMLCPHFDVTQGNGVRREEDFTKMLKRHPTERGIGVD HWALLILKGDGTYESAALPGKTRVTTLGNTSPTSTVPGIFVLDVVDGAVQRRRVPTTGQL SDVLREPAGPVVLDPFERFHAMENPTSSSGSLMQR
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_090650.1.fa Sequence name : LdBPK_090650 Sequence length : 335 VALUES OF COMPUTED PARAMETERS Coef20 : 3.490 CoefTot : -0.589 ChDiff : -3 ZoneTo : 18 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.794 1.312 0.296 0.583 MesoH : -0.346 0.350 -0.311 0.222 MuHd_075 : 11.039 3.456 4.146 2.038 MuHd_095 : 17.333 10.259 5.214 2.915 MuHd_100 : 17.259 12.293 5.639 3.063 MuHd_105 : 15.287 12.897 5.762 2.980 Hmax_075 : 6.650 6.300 0.914 3.280 Hmax_095 : 10.237 8.050 1.680 4.043 Hmax_100 : 9.900 10.200 1.875 3.980 Hmax_105 : 14.350 15.633 4.741 5.273 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9641 0.0359 DFMC : 0.9275 0.0725
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 335 LdBPK_090650.1 MGAPHLNSIRACLAGSGHDAFSEPVTIDHLLSLVATPKTGVVSVAYVGTATYDLAESQAEQTSLLLQRGWTVRPIQVADP 80 AVKAVNDGDAHFIQTAADIVLVSGGNTLYAVRRWEETGLARLLKDAAARQVVMAGGSAGAICWFTSGHSDSADPATYLQP 160 SLKRAALKMGLIPQDQISKTEAELADLSTSWSYIRVRGLNILPGMLCPHFDVTQGNGVRREEDFTKMLKRHPTERGIGVD 240 HWALLILKGDGTYESAALPGKTRVTTLGNTSPTSTVPGIFVLDVVDGAVQRRRVPTTGQLSDVLREPAGPVVLDPFERFH 320 AMENPTSSSGSLMQR 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ............... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_090650.1 10 PHLNSIR|AC 0.078 . LdBPK_090650.1 38 SLVATPK|TG 0.061 . LdBPK_090650.1 68 TSLLLQR|GW 0.101 . LdBPK_090650.1 73 QRGWTVR|PI 0.121 . LdBPK_090650.1 83 VADPAVK|AV 0.086 . LdBPK_090650.1 112 NTLYAVR|RW 0.074 . LdBPK_090650.1 113 TLYAVRR|WE 0.220 . LdBPK_090650.1 121 EETGLAR|LL 0.077 . LdBPK_090650.1 124 GLARLLK|DA 0.254 . LdBPK_090650.1 129 LKDAAAR|QV 0.138 . LdBPK_090650.1 163 YLQPSLK|RA 0.065 . LdBPK_090650.1 164 LQPSLKR|AA 0.180 . LdBPK_090650.1 168 LKRAALK|MG 0.071 . LdBPK_090650.1 179 PQDQISK|TE 0.051 . LdBPK_090650.1 195 TSWSYIR|VR 0.075 . LdBPK_090650.1 197 WSYIRVR|GL 0.115 . LdBPK_090650.1 219 TQGNGVR|RE 0.089 . LdBPK_090650.1 220 QGNGVRR|EE 0.127 . LdBPK_090650.1 226 REEDFTK|ML 0.067 . LdBPK_090650.1 229 DFTKMLK|RH 0.053 . LdBPK_090650.1 230 FTKMLKR|HP 0.160 . LdBPK_090650.1 235 KRHPTER|GI 0.178 . LdBPK_090650.1 248 WALLILK|GD 0.066 . LdBPK_090650.1 261 SAALPGK|TR 0.061 . LdBPK_090650.1 263 ALPGKTR|VT 0.088 . LdBPK_090650.1 291 VDGAVQR|RR 0.073 . LdBPK_090650.1 292 DGAVQRR|RV 0.198 . LdBPK_090650.1 293 GAVQRRR|VP 0.142 . LdBPK_090650.1 305 QLSDVLR|EP 0.082 . LdBPK_090650.1 318 VLDPFER|FH 0.095 . LdBPK_090650.1 335 SGSLMQR|-- 0.108 . ____________________________^_________________

  • Fasta :-

    >LdBPK_090650.1 ATGGGCGCGCCGCACTTGAATTCCATTCGCGCCTGCTTGGCCGGCTCCGGCCACGACGCC TTCAGTGAGCCTGTCACGATCGACCACCTCCTCTCACTCGTGGCGACACCCAAGACCGGG GTGGTGAGTGTCGCCTACGTTGGTACCGCCACCTACGACCTCGCAGAGAGCCAGGCGGAG CAGACATCCCTGCTACTGCAACGTGGCTGGACGGTTCGACCGATCCAAGTTGCTGACCCT GCCGTGAAGGCGGTCAACGACGGCGATGCGCATTTTATTCAAACCGCGGCCGATATTGTA CTCGTCTCGGGCGGCAACACACTCTACGCGGTGCGGCGGTGGGAAGAAACGGGGCTCGCG CGGCTGCTCAAGGACGCTGCGGCGCGCCAGGTCGTTATGGCGGGCGGCAGTGCCGGTGCG ATCTGCTGGTTCACCTCGGGCCACAGCGACTCCGCAGACCCCGCAACGTACCTGCAGCCG TCGTTGAAGAGGGCGGCACTGAAGATGGGCCTGATCCCGCAAGATCAGATCTCCAAGACC GAGGCAGAACTCGCGGATCTCAGCACCTCCTGGTCCTACATCCGCGTGCGTGGCCTCAAC ATTCTGCCGGGGATGCTGTGCCCCCACTTTGATGTAACTCAAGGCAACGGCGTACGACGT GAGGAGGACTTCACCAAGATGCTGAAGCGGCACCCAACCGAGCGGGGCATCGGCGTGGAT CACTGGGCGCTGCTCATCCTGAAGGGCGACGGCACGTACGAGAGTGCCGCGCTGCCGGGC AAGACCCGCGTCACGACCCTAGGCAATACCTCGCCCACTTCAACGGTGCCGGGCATCTTT GTCCTGGATGTAGTGGACGGTGCTGTCCAGCGACGCCGCGTGCCCACGACGGGGCAGCTG TCGGATGTCCTGCGAGAGCCGGCGGGGCCAGTGGTGCTGGATCCGTTTGAGCGTTTCCAC GCCATGGAAAACCCGACGTCGTCGTCCGGGTCTTTGATGCAGCGCTGA
  • Download Fasta

  • Fasta :-

    MGAPHLNSIRACLAGSGHDAFSEPVTIDHLLSLVATPKTGVVSVAYVGTATYDLAESQAE QTSLLLQRGWTVRPIQVADPAVKAVNDGDAHFIQTAADIVLVSGGNTLYAVRRWEETGLA RLLKDAAARQVVMAGGSAGAICWFTSGHSDSADPATYLQPSLKRAALKMGLIPQDQISKT EAELADLSTSWSYIRVRGLNILPGMLCPHFDVTQGNGVRREEDFTKMLKRHPTERGIGVD HWALLILKGDGTYESAALPGKTRVTTLGNTSPTSTVPGIFVLDVVDGAVQRRRVPTTGQL SDVLREPAGPVVLDPFERFHAMENPTSSSGSLMQR

    No Results
  • title: active site pocket
  • coordinates: G105,S137,S151,H209,R220,H241
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_090650.1271 SLGNTSPTST0.994unspLdBPK_090650.1271 SLGNTSPTST0.994unspLdBPK_090650.1271 SLGNTSPTST0.994unspLdBPK_090650.1161 SYLQPSLKRA0.995unspLdBPK_090650.1178 SQDQISKTEA0.995unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India