LdBPK_110240.1 | proteasome alpha 7 subunit, putative

_IDPredictionOTHERSPmTPCS_Position
LdBPK_110240.1OTHER0.9999770.0000140.000008
No Results

  • Fasta :-

    >LdBPK_110240.1 MSYDRAITVFSPDGHLFQVEYAQEAVKKGLAAVGVLGSDCVVIAVEKKSAVKLQDSRTIR KIYKVDAHIYLAFAGLSADARVLINKAQLECQRFSLNYEDTIDVDMLVRYVAGVQQKSTQ SGGSRPFGVATVIGGFNEDGKPHLWKTDPSGMCSAWRAVAIGRHDQTVIEYMEKNYKDGM SRDECVHFAIKSLLEVVESGSRNIELLVLQYKEERYLTEEELQKFVVEVEKEREEEAAKK KRQAEQE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_110240.1.fa Sequence name : LdBPK_110240 Sequence length : 247 VALUES OF COMPUTED PARAMETERS Coef20 : 3.580 CoefTot : -0.045 ChDiff : -5 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.347 2.088 0.382 0.683 MesoH : -0.963 0.410 -0.437 0.158 MuHd_075 : 28.919 14.664 6.446 4.721 MuHd_095 : 12.399 8.752 2.980 2.865 MuHd_100 : 14.983 13.569 5.107 4.806 MuHd_105 : 16.326 16.793 6.151 6.188 Hmax_075 : 13.650 10.150 1.599 4.130 Hmax_095 : 7.788 5.162 -0.059 3.614 Hmax_100 : 8.300 11.100 0.052 4.310 Hmax_105 : 4.500 10.600 -0.224 4.580 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9767 0.0233 DFMC : 0.9798 0.0202
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 247 LdBPK_110240.1 MSYDRAITVFSPDGHLFQVEYAQEAVKKGLAAVGVLGSDCVVIAVEKKSAVKLQDSRTIRKIYKVDAHIYLAFAGLSADA 80 RVLINKAQLECQRFSLNYEDTIDVDMLVRYVAGVQQKSTQSGGSRPFGVATVIGGFNEDGKPHLWKTDPSGMCSAWRAVA 160 IGRHDQTVIEYMEKNYKDGMSRDECVHFAIKSLLEVVESGSRNIELLVLQYKEERYLTEEELQKFVVEVEKEREEEAAKK 240 KRQAEQE 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .P..... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LdBPK_110240.1 5 --MSYDR|AI 0.082 . LdBPK_110240.1 27 YAQEAVK|KG 0.060 . LdBPK_110240.1 28 AQEAVKK|GL 0.143 . LdBPK_110240.1 47 VVIAVEK|KS 0.059 . LdBPK_110240.1 48 VIAVEKK|SA 0.238 . LdBPK_110240.1 52 EKKSAVK|LQ 0.054 . LdBPK_110240.1 57 VKLQDSR|TI 0.079 . LdBPK_110240.1 60 QDSRTIR|KI 0.408 . LdBPK_110240.1 61 DSRTIRK|IY 0.073 . LdBPK_110240.1 64 TIRKIYK|VD 0.066 . LdBPK_110240.1 81 GLSADAR|VL 0.103 . LdBPK_110240.1 86 ARVLINK|AQ 0.063 . LdBPK_110240.1 93 AQLECQR|FS 0.093 . LdBPK_110240.1 109 DVDMLVR|YV 0.104 . LdBPK_110240.1 117 VAGVQQK|ST 0.102 . LdBPK_110240.1 125 TQSGGSR|PF 0.126 . LdBPK_110240.1 141 GFNEDGK|PH 0.063 . LdBPK_110240.1 146 GKPHLWK|TD 0.069 . LdBPK_110240.1 157 GMCSAWR|AV 0.176 . LdBPK_110240.1 163 RAVAIGR|HD 0.103 . LdBPK_110240.1 174 VIEYMEK|NY 0.060 . LdBPK_110240.1 177 YMEKNYK|DG 0.061 . LdBPK_110240.1 182 YKDGMSR|DE 0.089 . LdBPK_110240.1 191 CVHFAIK|SL 0.076 . LdBPK_110240.1 202 VVESGSR|NI 0.067 . LdBPK_110240.1 212 LLVLQYK|EE 0.058 . LdBPK_110240.1 215 LQYKEER|YL 0.112 . LdBPK_110240.1 224 TEEELQK|FV 0.087 . LdBPK_110240.1 231 FVVEVEK|ER 0.058 . LdBPK_110240.1 233 VEVEKER|EE 0.081 . LdBPK_110240.1 239 REEEAAK|KK 0.070 . LdBPK_110240.1 240 EEEAAKK|KR 0.090 . LdBPK_110240.1 241 EEAAKKK|RQ 0.108 . LdBPK_110240.1 242 EAAKKKR|QA 0.500 *ProP* ____________________________^_________________

  • Fasta :-

    >LdBPK_110240.1 ATGAGCTACGATCGCGCCATCACGGTCTTCTCCCCGGACGGGCATCTCTTTCAGGTCGAG TACGCTCAGGAAGCCGTGAAGAAGGGCTTGGCGGCGGTCGGCGTGCTCGGCAGCGACTGC GTTGTGATCGCGGTGGAGAAGAAGTCAGCTGTCAAGCTGCAGGACAGCCGCACCATCCGT AAGATCTACAAAGTGGATGCGCACATCTACCTCGCCTTTGCCGGCCTTTCCGCCGACGCG CGCGTGCTCATCAACAAGGCCCAGCTCGAGTGCCAGCGCTTCTCGCTCAACTACGAGGAC ACCATCGACGTGGACATGCTCGTGCGCTACGTGGCCGGGGTGCAGCAGAAGTCGACGCAG AGCGGCGGAAGCCGCCCGTTCGGCGTGGCCACGGTGATTGGGGGATTCAACGAGGACGGC AAGCCACACCTATGGAAGACAGACCCATCTGGCATGTGCTCTGCCTGGCGTGCCGTCGCC ATCGGCCGCCACGACCAGACGGTGATTGAGTACATGGAGAAGAACTACAAGGATGGCATG TCGCGCGACGAATGTGTGCACTTCGCGATCAAGTCGCTGCTGGAGGTAGTGGAGAGCGGC TCGCGCAACATCGAGCTGCTGGTACTGCAGTACAAGGAGGAGCGCTACCTGACCGAGGAA GAGCTGCAGAAGTTTGTCGTGGAGGTGGAGAAGGAAAGGGAAGAGGAAGCAGCGAAGAAG AAGCGCCAGGCAGAGCAGGAGTAG
  • Download Fasta

  • Fasta :-

    MSYDRAITVFSPDGHLFQVEYAQEAVKKGLAAVGVLGSDCVVIAVEKKSAVKLQDSRTIR KIYKVDAHIYLAFAGLSADARVLINKAQLECQRFSLNYEDTIDVDMLVRYVAGVQQKSTQ SGGSRPFGVATVIGGFNEDGKPHLWKTDPSGMCSAWRAVAIGRHDQTVIEYMEKNYKDGM SRDECVHFAIKSLLEVVESGSRNIELLVLQYKEERYLTEEELQKFVVEVEKEREEEAAKK KRQAEQE

  • title: active site
  • coordinates: L30,E46,K48,K61,R163
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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India