LdBPK_110630.1 | metallo-peptidase, Clan MF, Family M17 (fragment)

_IDPredictionOTHERSPmTPCS_Position
LdBPK_110630.1OTHER0.9990600.0004790.000461
No Results

  • Fasta :-

    >LdBPK_110630.1 MTVLKGEELREKGYGGIYAVGKCAQYPPHLVTLRYRNPNAAEGAKNIAMVGKGIVYDCGG LALKPAAHMTNMKTDMGGSAGVFCAFIAVVRSMKMQRTHFSHIANISVTLCLAENAIGPH SYRNDDVVVMKSGKSVEVMNTDAEGRIVLGDGVCYATGEQDFVPDVLIDMATLTGAQGVA TGSKHAGVYASDAEAEKDMINAGLRSGDLCYPVLYCPEYHEEVYKSPCADMRNTANSPSS AGSSCGGYFVEQHLSERFRGPFVHVDMAYPSSNTAGATGYGVTLV
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_110630.1.fa Sequence name : LdBPK_110630 Sequence length : 285 VALUES OF COMPUTED PARAMETERS Coef20 : 3.104 CoefTot : -0.241 ChDiff : -5 ZoneTo : 6 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.418 1.547 0.277 0.600 MesoH : -0.035 0.534 -0.243 0.252 MuHd_075 : 11.970 11.844 3.970 3.994 MuHd_095 : 15.279 7.298 4.284 1.442 MuHd_100 : 15.704 8.411 5.646 1.868 MuHd_105 : 16.027 11.112 6.465 2.432 Hmax_075 : 3.400 11.100 0.270 4.700 Hmax_095 : 4.112 3.850 -0.760 2.651 Hmax_100 : 1.300 6.500 -0.197 2.390 Hmax_105 : 11.200 7.117 2.031 4.188 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9781 0.0219 DFMC : 0.9766 0.0234
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 285 LdBPK_110630.1 MTVLKGEELREKGYGGIYAVGKCAQYPPHLVTLRYRNPNAAEGAKNIAMVGKGIVYDCGGLALKPAAHMTNMKTDMGGSA 80 GVFCAFIAVVRSMKMQRTHFSHIANISVTLCLAENAIGPHSYRNDDVVVMKSGKSVEVMNTDAEGRIVLGDGVCYATGEQ 160 DFVPDVLIDMATLTGAQGVATGSKHAGVYASDAEAEKDMINAGLRSGDLCYPVLYCPEYHEEVYKSPCADMRNTANSPSS 240 AGSSCGGYFVEQHLSERFRGPFVHVDMAYPSSNTAGATGYGVTLV 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ............................................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_110630.1 5 --MTVLK|GE 0.065 . LdBPK_110630.1 10 LKGEELR|EK 0.109 . LdBPK_110630.1 12 GEELREK|GY 0.078 . LdBPK_110630.1 22 GIYAVGK|CA 0.071 . LdBPK_110630.1 34 PHLVTLR|YR 0.075 . LdBPK_110630.1 36 LVTLRYR|NP 0.093 . LdBPK_110630.1 45 NAAEGAK|NI 0.073 . LdBPK_110630.1 52 NIAMVGK|GI 0.075 . LdBPK_110630.1 64 CGGLALK|PA 0.063 . LdBPK_110630.1 73 AHMTNMK|TD 0.064 . LdBPK_110630.1 91 AFIAVVR|SM 0.120 . LdBPK_110630.1 94 AVVRSMK|MQ 0.138 . LdBPK_110630.1 97 RSMKMQR|TH 0.094 . LdBPK_110630.1 123 IGPHSYR|ND 0.097 . LdBPK_110630.1 131 DDVVVMK|SG 0.089 . LdBPK_110630.1 134 VVMKSGK|SV 0.130 . LdBPK_110630.1 146 NTDAEGR|IV 0.093 . LdBPK_110630.1 184 GVATGSK|HA 0.077 . LdBPK_110630.1 197 SDAEAEK|DM 0.070 . LdBPK_110630.1 205 MINAGLR|SG 0.110 . LdBPK_110630.1 225 YHEEVYK|SP 0.081 . LdBPK_110630.1 232 SPCADMR|NT 0.112 . LdBPK_110630.1 257 EQHLSER|FR 0.105 . LdBPK_110630.1 259 HLSERFR|GP 0.136 . ____________________________^_________________

  • Fasta :-

    >LdBPK_110630.1 ATGACTGTGCTCAAGGGTGAGGAGCTGCGCGAGAAGGGCTATGGCGGCATCTACGCTGTC GGCAAGTGTGCGCAGTACCCGCCGCACCTGGTGACGCTGCGCTACAGGAACCCGAACGCC GCTGAGGGCGCCAAGAATATTGCGATGGTTGGCAAGGGTATCGTGTACGACTGCGGCGGC CTTGCGCTGAAGCCAGCGGCGCACATGACGAACATGAAGACGGATATGGGCGGCTCGGCT GGCGTGTTCTGCGCCTTCATCGCGGTGGTGCGCAGCATGAAGATGCAGAGGACTCACTTC AGCCACATCGCCAACATCAGCGTGACGCTGTGCTTGGCAGAGAACGCGATCGGCCCCCAC TCGTACCGCAACGACGACGTTGTGGTGATGAAGTCGGGCAAGTCGGTGGAGGTGATGAAC ACGGATGCGGAGGGCCGCATCGTGCTGGGCGACGGCGTGTGCTACGCGACGGGCGAGCAG GACTTCGTCCCGGATGTGCTGATCGACATGGCGACGCTGACGGGTGCGCAGGGTGTGGCG ACGGGCTCGAAGCACGCCGGCGTTTACGCCAGCGATGCCGAGGCGGAAAAGGACATGATC AATGCGGGCCTGCGGTCCGGCGACCTGTGCTACCCAGTGCTGTACTGCCCCGAGTACCAC GAGGAGGTGTACAAAAGCCCTTGCGCCGACATGCGCAACACTGCGAACTCGCCATCCAGC GCCGGCTCGAGCTGCGGCGGGTACTTTGTCGAGCAGCACCTGAGCGAGCGCTTCAGGGGC CCCTTTGTGCACGTTGATATGGCCTACCCCAGCTCCAACACGGCCGGCGCCACCGGCTAC GGTGTTACTCTCGTG
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  • Fasta :-

    MTVLKGEELREKGYGGIYAVGKCAQYPPHLVTLRYRNPNAAEGAKNIAMVGKGIVYDCGG LALKPAAHMTNMKTDMGGSAGVFCAFIAVVRSMKMQRTHFSHIANISVTLCLAENAIGPH SYRNDDVVVMKSGKSVEVMNTDAEGRIVLGDGVCYATGEQDFVPDVLIDMATLTGAQGVA TGSKHAGVYASDAEAEKDMINAGLRSGDLCYPVLYCPEYHEEVYKSPCADMRNTANSPSS AGSSCGGYFVEQHLSERFRGPFVHVDMAYPSSNTAGATGYGVTLV

  • title: Substrate-binding/catalytic site
  • coordinates: K52,D57,K64,D75,D142,E144,R146,L173
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_110630.1237 SNTANSPSSA0.994unspLdBPK_110630.1237 SNTANSPSSA0.994unspLdBPK_110630.1237 SNTANSPSSA0.994unspLdBPK_110630.192 SAVVRSMKMQ0.994unspLdBPK_110630.1121 SIGPHSYRND0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India