LdBPK_110640.1 | metallo-peptidase, Clan MF, Family M17 (fragment)

_IDPredictionOTHERSPmTPCS_Position
LdBPK_110640.1OTHER0.9989770.0003170.000706
No Results

  • Fasta :-

    >LdBPK_110640.1 MKRPRSNSVVEETAVSAYVQTCTNFRSNVTFTDISKVSCVAPHVLLVGALEQLRESSLKS VLFYCPAVAEALQRVKAGATVKTLAEVPGRKGYTEVTVTALPATTSRTNCPYRADSMSEA VAAACGSVEEGEVLDVYVRAPAGSETAVANAVARAAPHSYTAKARQATKAYMKQAVTLNV VMSSRAAFTQELVRGKSVCVAELEAICTSVQLCQRLVDTPPCMLDTVVYAEIAAAYAAEL GVDMTVLKGEELREKGYGGIYAVGKCAQYPPHLVTLRYRNPNAAEGAKNIAMVGKGIVYD CGGLALKPAAHMTNMKTDMGGSAGVFCAFIAVVRSMKM
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_110640.1.fa Sequence name : LdBPK_110640 Sequence length : 338 VALUES OF COMPUTED PARAMETERS Coef20 : 4.181 CoefTot : -0.006 ChDiff : 7 ZoneTo : 10 KR : 3 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.418 1.653 0.277 0.600 MesoH : -0.348 0.679 -0.211 0.234 MuHd_075 : 25.412 20.090 8.705 5.213 MuHd_095 : 10.170 7.291 2.378 0.715 MuHd_100 : 2.727 3.565 1.309 1.532 MuHd_105 : 12.492 4.298 3.249 2.927 Hmax_075 : 5.950 13.767 -0.059 2.403 Hmax_095 : 0.612 4.638 -1.407 1.724 Hmax_100 : 0.400 4.000 -1.608 0.910 Hmax_105 : -3.100 3.400 -1.361 1.200 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8022 0.1978 DFMC : 0.6995 0.3005
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 338 LdBPK_110640.1 MKRPRSNSVVEETAVSAYVQTCTNFRSNVTFTDISKVSCVAPHVLLVGALEQLRESSLKSVLFYCPAVAEALQRVKAGAT 80 VKTLAEVPGRKGYTEVTVTALPATTSRTNCPYRADSMSEAVAAACGSVEEGEVLDVYVRAPAGSETAVANAVARAAPHSY 160 TAKARQATKAYMKQAVTLNVVMSSRAAFTQELVRGKSVCVAELEAICTSVQLCQRLVDTPPCMLDTVVYAEIAAAYAAEL 240 GVDMTVLKGEELREKGYGGIYAVGKCAQYPPHLVTLRYRNPNAAEGAKNIAMVGKGIVYDCGGLALKPAAHMTNMKTDMG 320 GSAGVFCAFIAVVRSMKM 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .................. 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_110640.1 2 -----MK|RP 0.057 . LdBPK_110640.1 3 ----MKR|PR 0.170 . LdBPK_110640.1 5 --MKRPR|SN 0.272 . LdBPK_110640.1 26 QTCTNFR|SN 0.105 . LdBPK_110640.1 36 TFTDISK|VS 0.058 . LdBPK_110640.1 54 GALEQLR|ES 0.068 . LdBPK_110640.1 59 LRESSLK|SV 0.107 . LdBPK_110640.1 74 VAEALQR|VK 0.074 . LdBPK_110640.1 76 EALQRVK|AG 0.057 . LdBPK_110640.1 82 KAGATVK|TL 0.064 . LdBPK_110640.1 90 LAEVPGR|KG 0.087 . LdBPK_110640.1 91 AEVPGRK|GY 0.087 . LdBPK_110640.1 107 LPATTSR|TN 0.107 . LdBPK_110640.1 113 RTNCPYR|AD 0.155 . LdBPK_110640.1 139 VLDVYVR|AP 0.078 . LdBPK_110640.1 154 VANAVAR|AA 0.152 . LdBPK_110640.1 163 PHSYTAK|AR 0.074 . LdBPK_110640.1 165 SYTAKAR|QA 0.152 . LdBPK_110640.1 169 KARQATK|AY 0.075 . LdBPK_110640.1 173 ATKAYMK|QA 0.066 . LdBPK_110640.1 185 NVVMSSR|AA 0.132 . LdBPK_110640.1 194 FTQELVR|GK 0.085 . LdBPK_110640.1 196 QELVRGK|SV 0.114 . LdBPK_110640.1 215 SVQLCQR|LV 0.108 . LdBPK_110640.1 248 VDMTVLK|GE 0.065 . LdBPK_110640.1 253 LKGEELR|EK 0.109 . LdBPK_110640.1 255 GEELREK|GY 0.078 . LdBPK_110640.1 265 GIYAVGK|CA 0.071 . LdBPK_110640.1 277 PHLVTLR|YR 0.075 . LdBPK_110640.1 279 LVTLRYR|NP 0.093 . LdBPK_110640.1 288 NAAEGAK|NI 0.073 . LdBPK_110640.1 295 NIAMVGK|GI 0.075 . LdBPK_110640.1 307 CGGLALK|PA 0.063 . LdBPK_110640.1 316 AHMTNMK|TD 0.064 . LdBPK_110640.1 334 AFIAVVR|SM 0.100 . LdBPK_110640.1 337 AVVRSMK|M- 0.133 . ____________________________^_________________

  • Fasta :-

    >LdBPK_110640.1 ATGAAGCGCCCGCGTTCCAATTCGGTGGTGGAGGAGACGGCGGTGTCGGCGTACGTGCAG ACGTGCACGAACTTCAGGTCGAATGTGACGTTCACGGACATCTCGAAGGTATCATGTGTT GCACCGCACGTGCTTCTGGTGGGCGCGCTGGAGCAGCTGCGCGAAAGCTCTCTCAAGTCC GTGCTGTTCTACTGCCCGGCTGTCGCGGAGGCGCTACAGCGCGTCAAGGCTGGTGCGACG GTGAAGACGCTTGCGGAGGTTCCGGGGCGCAAGGGCTACACGGAAGTGACGGTGACGGCG CTGCCGGCAACCACGTCGCGCACAAACTGCCCTTACCGCGCGGACAGCATGTCGGAGGCC GTCGCTGCTGCGTGCGGGAGCGTCGAAGAAGGCGAGGTGCTTGACGTGTACGTGCGCGCG CCTGCTGGCTCCGAGACGGCGGTCGCGAACGCTGTTGCGCGTGCTGCGCCCCACTCGTAC ACCGCGAAGGCTAGGCAGGCGACGAAGGCGTACATGAAGCAGGCAGTAACGTTGAATGTC GTGATGTCGTCACGCGCTGCGTTCACACAGGAGCTGGTGCGCGGAAAGTCCGTGTGCGTG GCGGAGCTGGAGGCGATCTGCACGTCTGTGCAGCTGTGCCAGCGCCTGGTGGACACGCCG CCGTGCATGCTGGACACTGTCGTGTACGCTGAGATCGCTGCTGCTTACGCCGCTGAGCTC GGTGTGGATATGACTGTGCTCAAGGGTGAGGAGCTGCGCGAGAAGGGCTATGGCGGCATC TACGCTGTCGGCAAGTGTGCGCAGTACCCGCCGCACCTGGTGACGCTGCGCTACAGGAAC CCGAACGCCGCTGAGGGCGCCAAGAATATTGCGATGGTTGGCAAGGGTATCGTGTACGAC TGCGGCGGCCTTGCGCTGAAGCCAGCGGCGCACATGACGAACATGAAGACGGATATGGGC GGCTCGGCTGGCGTGTTCTGCGCCTTCATCGCGGTGGTGCGCAGCATGAAGATG
  • Download Fasta

  • Fasta :-

    MKRPRSNSVVEETAVSAYVQTCTNFRSNVTFTDISKVSCVAPHVLLVGALEQLRESSLKS VLFYCPAVAEALQRVKAGATVKTLAEVPGRKGYTEVTVTALPATTSRTNCPYRADSMSEA VAAACGSVEEGEVLDVYVRAPAGSETAVANAVARAAPHSYTAKARQATKAYMKQAVTLNV VMSSRAAFTQELVRGKSVCVAELEAICTSVQLCQRLVDTPPCMLDTVVYAEIAAAYAAEL GVDMTVLKGEELREKGYGGIYAVGKCAQYPPHLVTLRYRNPNAAEGAKNIAMVGKGIVYD CGGLALKPAAHMTNMKTDMGGSAGVFCAFIAVVRSMKM

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_110640.18 SPRSNSVVEE0.997unspLdBPK_110640.1116 SYRADSMSEA0.998unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India