LdBPK_110730.1 | PUF nine target 1

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0020023      

  • Curated_GO_Components:  kinetoplast      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LdBPK_110730.1SP0.4474740.5465090.006017CS pos: 22-23. VTA-WP. Pr: 0.9666
No Results

  • Fasta :-

    >LdBPK_110730.1 MPPRRCPNRLLVLCASINDVTAWPFWKFLQMKKIRGVTDMALLAFNSDGGSFEARIDGDR YQLKNYAKVRGYQHDMFESFVHRWHDPGRSYFVYGGHGMGDYVELEQNRVSLQAHELADV FGTRVFEAVLFDACFMANLDCAYHLRHNTRYIGACEGYMWEPDTALDYHVFNTHNASAMS RFKDPLHILRVIQADYCSKAPRGDFTIIDTTHIAALRQYVQEHVMQRVYDRATFYSLPQR ERLQQIAEASIQASISQFGHPGGDTNVMNGVGSGTGRPRTAPSSPEVLALSAAGRPTRRQ RMLQAIQFEHSLYPSEVDDKQLLDLKSYLTDMLREEQQLKAWEAAALGPQRRIAAGRRRL RSDGLQHGGSSGIAAPSSASSSFAVWKAPPSRALFVDRHGRLPAASSTGYSPSINGGPAA ANDKQKEATALSPPALAATLTMATAPPPSLSTSYKGSAQEGLDLFHQVVVSHIPPKAASI YATQLGGLSLTVHEYSAMSRPAEPWSVGSKRLLKRRAKQFLKNGELSEVVMESPKASPSV TSAALAATVNKATATAAAVKGASAGKPQHATSAAALPLSPRTRMLFPDQRLSFTSSSNGT NSDSSLPLSLSAPLSTSSTDACNSSMKTVILDPPQRAASCTSLPNSKQRTSAC
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_110730.1.fa Sequence name : LdBPK_110730 Sequence length : 653 VALUES OF COMPUTED PARAMETERS Coef20 : 4.310 CoefTot : -0.840 ChDiff : 16 ZoneTo : 38 KR : 7 DE : 1 CleavSite : 37 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.553 1.353 0.133 0.556 MesoH : 0.241 0.271 -0.236 0.263 MuHd_075 : 48.389 22.611 11.342 9.437 MuHd_095 : 29.618 23.121 10.069 6.131 MuHd_100 : 37.789 21.512 11.448 7.265 MuHd_105 : 37.254 22.406 10.804 7.601 Hmax_075 : 13.600 17.850 4.574 4.702 Hmax_095 : 6.563 17.150 3.800 3.185 Hmax_100 : 16.500 20.600 6.467 5.400 Hmax_105 : 16.217 21.000 6.099 2.126 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1303 0.8697 DFMC : 0.1061 0.8939 This protein is probably imported in mitochondria. f(Ser) = 0.0263 f(Arg) = 0.1053 CMi = 0.12107 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 653 LdBPK_110730.1 MPPRRCPNRLLVLCASINDVTAWPFWKFLQMKKIRGVTDMALLAFNSDGGSFEARIDGDRYQLKNYAKVRGYQHDMFESF 80 VHRWHDPGRSYFVYGGHGMGDYVELEQNRVSLQAHELADVFGTRVFEAVLFDACFMANLDCAYHLRHNTRYIGACEGYMW 160 EPDTALDYHVFNTHNASAMSRFKDPLHILRVIQADYCSKAPRGDFTIIDTTHIAALRQYVQEHVMQRVYDRATFYSLPQR 240 ERLQQIAEASIQASISQFGHPGGDTNVMNGVGSGTGRPRTAPSSPEVLALSAAGRPTRRQRMLQAIQFEHSLYPSEVDDK 320 QLLDLKSYLTDMLREEQQLKAWEAAALGPQRRIAAGRRRLRSDGLQHGGSSGIAAPSSASSSFAVWKAPPSRALFVDRHG 400 RLPAASSTGYSPSINGGPAAANDKQKEATALSPPALAATLTMATAPPPSLSTSYKGSAQEGLDLFHQVVVSHIPPKAASI 480 YATQLGGLSLTVHEYSAMSRPAEPWSVGSKRLLKRRAKQFLKNGELSEVVMESPKASPSVTSAALAATVNKATATAAAVK 560 GASAGKPQHATSAAALPLSPRTRMLFPDQRLSFTSSSNGTNSDSSLPLSLSAPLSTSSTDACNSSMKTVILDPPQRAASC 640 TSLPNSKQRTSAC 720 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ............. 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_110730.1 4 ---MPPR|RC 0.074 . LdBPK_110730.1 5 --MPPRR|CP 0.114 . LdBPK_110730.1 9 PRRCPNR|LL 0.084 . LdBPK_110730.1 27 TAWPFWK|FL 0.071 . LdBPK_110730.1 32 WKFLQMK|KI 0.085 . LdBPK_110730.1 33 KFLQMKK|IR 0.085 . LdBPK_110730.1 35 LQMKKIR|GV 0.177 . LdBPK_110730.1 55 GGSFEAR|ID 0.136 . LdBPK_110730.1 60 ARIDGDR|YQ 0.077 . LdBPK_110730.1 64 GDRYQLK|NY 0.076 . LdBPK_110730.1 68 QLKNYAK|VR 0.073 . LdBPK_110730.1 70 KNYAKVR|GY 0.114 . LdBPK_110730.1 83 FESFVHR|WH 0.145 . LdBPK_110730.1 89 RWHDPGR|SY 0.208 . LdBPK_110730.1 109 VELEQNR|VS 0.069 . LdBPK_110730.1 124 ADVFGTR|VF 0.111 . LdBPK_110730.1 146 DCAYHLR|HN 0.102 . LdBPK_110730.1 150 HLRHNTR|YI 0.245 . LdBPK_110730.1 181 NASAMSR|FK 0.115 . LdBPK_110730.1 183 SAMSRFK|DP 0.076 . LdBPK_110730.1 190 DPLHILR|VI 0.078 . LdBPK_110730.1 199 QADYCSK|AP 0.059 . LdBPK_110730.1 202 YCSKAPR|GD 0.171 . LdBPK_110730.1 217 THIAALR|QY 0.091 . LdBPK_110730.1 227 QEHVMQR|VY 0.104 . LdBPK_110730.1 231 MQRVYDR|AT 0.141 . LdBPK_110730.1 240 FYSLPQR|ER 0.084 . LdBPK_110730.1 242 SLPQRER|LQ 0.090 . LdBPK_110730.1 277 VGSGTGR|PR 0.080 . LdBPK_110730.1 279 SGTGRPR|TA 0.093 . LdBPK_110730.1 295 ALSAAGR|PT 0.127 . LdBPK_110730.1 298 AAGRPTR|RQ 0.181 . LdBPK_110730.1 299 AGRPTRR|QR 0.116 . LdBPK_110730.1 301 RPTRRQR|ML 0.437 . LdBPK_110730.1 320 PSEVDDK|QL 0.059 . LdBPK_110730.1 326 KQLLDLK|SY 0.060 . LdBPK_110730.1 334 YLTDMLR|EE 0.068 . LdBPK_110730.1 340 REEQQLK|AW 0.072 . LdBPK_110730.1 351 AALGPQR|RI 0.091 . LdBPK_110730.1 352 ALGPQRR|IA 0.163 . LdBPK_110730.1 357 RRIAAGR|RR 0.084 . LdBPK_110730.1 358 RIAAGRR|RL 0.116 . LdBPK_110730.1 359 IAAGRRR|LR 0.200 . LdBPK_110730.1 361 AGRRRLR|SD 0.463 . LdBPK_110730.1 387 SSFAVWK|AP 0.061 . LdBPK_110730.1 392 WKAPPSR|AL 0.112 . LdBPK_110730.1 398 RALFVDR|HG 0.077 . LdBPK_110730.1 401 FVDRHGR|LP 0.158 . LdBPK_110730.1 424 PAAANDK|QK 0.065 . LdBPK_110730.1 426 AANDKQK|EA 0.083 . LdBPK_110730.1 455 SLSTSYK|GS 0.113 . LdBPK_110730.1 476 VSHIPPK|AA 0.098 . LdBPK_110730.1 500 EYSAMSR|PA 0.113 . LdBPK_110730.1 510 PWSVGSK|RL 0.060 . LdBPK_110730.1 511 WSVGSKR|LL 0.196 . LdBPK_110730.1 514 GSKRLLK|RR 0.097 . LdBPK_110730.1 515 SKRLLKR|RA 0.276 . LdBPK_110730.1 516 KRLLKRR|AK 0.139 . LdBPK_110730.1 518 LLKRRAK|QF 0.141 . LdBPK_110730.1 522 RAKQFLK|NG 0.063 . LdBPK_110730.1 535 VVMESPK|AS 0.061 . LdBPK_110730.1 551 LAATVNK|AT 0.072 . LdBPK_110730.1 560 ATAAAVK|GA 0.101 . LdBPK_110730.1 566 KGASAGK|PQ 0.062 . LdBPK_110730.1 581 ALPLSPR|TR 0.071 . LdBPK_110730.1 583 PLSPRTR|ML 0.130 . LdBPK_110730.1 590 MLFPDQR|LS 0.076 . LdBPK_110730.1 627 ACNSSMK|TV 0.078 . LdBPK_110730.1 636 ILDPPQR|AA 0.081 . LdBPK_110730.1 647 TSLPNSK|QR 0.057 . LdBPK_110730.1 649 LPNSKQR|TS 0.119 . ____________________________^_________________

  • Fasta :-

    >LdBPK_110730.1 ATGCCGCCGAGGCGCTGCCCAAACCGCCTCCTGGTGCTGTGCGCCTCCATCAATGATGTC ACAGCATGGCCGTTTTGGAAGTTCTTGCAGATGAAGAAGATTCGCGGCGTGACGGACATG GCGCTGCTCGCCTTCAACAGCGACGGCGGCAGCTTTGAGGCTCGCATCGATGGCGACAGG TACCAGCTCAAGAACTACGCCAAGGTGCGCGGCTACCAGCACGACATGTTTGAGAGCTTC GTGCATCGCTGGCACGATCCGGGCCGAAGCTATTTCGTGTATGGCGGGCATGGTATGGGC GACTATGTGGAGCTAGAGCAGAACCGTGTTTCGCTGCAGGCGCACGAGCTCGCCGACGTC TTCGGCACGCGTGTCTTCGAAGCCGTGCTCTTTGACGCCTGCTTCATGGCGAACCTTGAC TGCGCCTATCATCTGCGCCACAACACGCGGTACATCGGTGCCTGTGAGGGGTACATGTGG GAGCCTGACACGGCCCTCGACTACCATGTCTTCAACACCCACAACGCGAGCGCCATGAGC CGCTTCAAAGACCCGCTGCACATCCTCCGCGTTATTCAGGCGGACTACTGCAGCAAGGCG CCGCGTGGCGACTTCACCATCATCGACACCACGCACATTGCGGCGCTGCGGCAGTACGTG CAGGAGCATGTCATGCAGCGCGTTTATGACCGGGCGACCTTCTACAGCCTACCGCAGCGA GAGCGACTGCAGCAAATCGCCGAGGCGTCGATTCAGGCGTCCATATCCCAGTTTGGCCAC CCCGGCGGTGACACCAACGTGATGAATGGCGTTGGCAGTGGTACTGGCCGCCCGCGCACC GCCCCATCGTCACCCGAGGTGCTTGCGCTTTCCGCCGCCGGTAGACCGACGCGGCGGCAG CGAATGCTGCAGGCGATTCAGTTTGAGCACTCGCTGTACCCGTCGGAGGTAGACGACAAA CAGCTGCTCGACCTCAAGTCGTATCTCACGGACATGCTGCGGGAGGAGCAGCAGCTAAAG GCGTGGGAGGCAGCGGCGCTGGGGCCGCAGCGCCGCATTGCGGCTGGCCGCCGCCGCTTG CGAAGTGATGGACTGCAGCATGGTGGCAGCTCCGGAATCGCCGCCCCCTCCTCCGCCTCG TCCTCCTTCGCCGTCTGGAAGGCGCCGCCGTCGCGGGCGCTGTTTGTTGATCGGCACGGA CGGCTGCCTGCTGCCAGCTCTACAGGGTACTCGCCGTCCATCAACGGTGGCCCAGCCGCA GCAAACGACAAGCAAAAAGAGGCGACGGCGCTCTCTCCTCCAGCCCTTGCGGCCACTCTA ACGATGGCAACAGCGCCGCCTCCGTCTCTCTCCACCTCTTACAAGGGCAGCGCGCAGGAG GGGCTAGATCTTTTCCACCAGGTTGTCGTGAGCCACATCCCACCCAAGGCCGCTTCCATC TACGCAACCCAGCTCGGGGGGCTATCCTTAACGGTGCACGAGTACAGTGCCATGTCGCGG CCGGCAGAGCCGTGGTCGGTGGGCTCGAAGAGGTTGCTGAAGCGCCGGGCAAAGCAATTC CTGAAGAACGGCGAACTCTCGGAGGTGGTGATGGAGTCCCCGAAGGCGAGCCCATCCGTC ACCAGCGCTGCCCTCGCGGCAACCGTGAACAAGGCGACAGCGACGGCCGCGGCAGTGAAG GGTGCTTCTGCAGGAAAACCCCAGCATGCGACTTCCGCCGCCGCGCTGCCGCTATCACCC AGAACACGAATGCTCTTCCCGGACCAGCGTCTGAGTTTCACGAGCAGCAGTAATGGCACA AACAGCGACAGCTCCTTGCCGCTCAGCTTGTCCGCACCGCTTTCCACCTCATCCACGGAT GCATGCAACAGCAGCATGAAAACAGTAATTCTCGACCCGCCACAGCGGGCTGCCTCCTGT ACGTCGTTACCCAACTCCAAACAACGTACAAGCGCCTGCTGA
  • Download Fasta

  • Fasta :-

    MPPRRCPNRLLVLCASINDVTAWPFWKFLQMKKIRGVTDMALLAFNSDGGSFEARIDGDR YQLKNYAKVRGYQHDMFESFVHRWHDPGRSYFVYGGHGMGDYVELEQNRVSLQAHELADV FGTRVFEAVLFDACFMANLDCAYHLRHNTRYIGACEGYMWEPDTALDYHVFNTHNASAMS RFKDPLHILRVIQADYCSKAPRGDFTIIDTTHIAALRQYVQEHVMQRVYDRATFYSLPQR ERLQQIAEASIQASISQFGHPGGDTNVMNGVGSGTGRPRTAPSSPEVLALSAAGRPTRRQ RMLQAIQFEHSLYPSEVDDKQLLDLKSYLTDMLREEQQLKAWEAAALGPQRRIAAGRRRL RSDGLQHGGSSGIAAPSSASSSFAVWKAPPSRALFVDRHGRLPAASSTGYSPSINGGPAA ANDKQKEATALSPPALAATLTMATAPPPSLSTSYKGSAQEGLDLFHQVVVSHIPPKAASI YATQLGGLSLTVHEYSAMSRPAEPWSVGSKRLLKRRAKQFLKNGELSEVVMESPKASPSV TSAALAATVNKATATAAAVKGASAGKPQHATSAAALPLSPRTRMLFPDQRLSFTSSSNGT NSDSSLPLSLSAPLSTSSTDACNSSMKTVILDPPQRAASCTSLPNSKQRTSAC

    No Results
    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_110730.1533 SVVMESPKAS0.995unspLdBPK_110730.1533 SVVMESPKAS0.995unspLdBPK_110730.1533 SVVMESPKAS0.995unspLdBPK_110730.1284 STAPSSPEVL0.996unspLdBPK_110730.1453 SSLSTSYKGS0.994unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India