LdBPK_120030.1 | proteasome beta-1 subunit, putative

_IDPredictionOTHERSPmTPCS_Position
LdBPK_120030.1OTHER0.9994950.0004070.000098
No Results

  • Fasta :-

    >LdBPK_120030.1 MLQRPDHTLLQDPSYPKDIEQKLTENGPAQAGKQLFQPDLAVIDPQLSEAVSLGTTILAV SYKGGVVLAADSRTSSGTYVVNRASNKLTKLTEKIYCCRSGSAADTQALAERVSNYLGSY QTDIGADVNVATAANLFHKMCYVNRWNISAGIIVAGYDPINGGSVYSIPSGGSCVKLDYA LGGSGSIFLYSFFDANYKPGMSKSECVAFCQRAVAHAYSRDGSSGGLIRTITLDAEEAED LTVPWKRSPYCMEKDPKYQVQAVQNPPFSSSAKVTGNRMSSTG
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_120030.1.fa Sequence name : LdBPK_120030 Sequence length : 283 VALUES OF COMPUTED PARAMETERS Coef20 : 2.818 CoefTot : -0.151 ChDiff : 0 ZoneTo : 5 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.118 1.382 0.138 0.555 MesoH : 0.096 0.460 -0.155 0.326 MuHd_075 : 24.580 14.366 8.049 4.834 MuHd_095 : 17.267 14.785 5.152 4.594 MuHd_100 : 21.656 15.329 6.778 5.621 MuHd_105 : 17.941 12.988 6.443 5.628 Hmax_075 : 10.150 6.767 0.497 3.547 Hmax_095 : -5.775 2.362 -3.671 1.558 Hmax_100 : 0.600 2.100 -1.906 2.300 Hmax_105 : 0.100 2.400 -1.841 2.270 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9716 0.0284 DFMC : 0.9681 0.0319
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 283 LdBPK_120030.1 MLQRPDHTLLQDPSYPKDIEQKLTENGPAQAGKQLFQPDLAVIDPQLSEAVSLGTTILAVSYKGGVVLAADSRTSSGTYV 80 VNRASNKLTKLTEKIYCCRSGSAADTQALAERVSNYLGSYQTDIGADVNVATAANLFHKMCYVNRWNISAGIIVAGYDPI 160 NGGSVYSIPSGGSCVKLDYALGGSGSIFLYSFFDANYKPGMSKSECVAFCQRAVAHAYSRDGSSGGLIRTITLDAEEAED 240 LTVPWKRSPYCMEKDPKYQVQAVQNPPFSSSAKVTGNRMSSTG 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ........................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_120030.1 4 ---MLQR|PD 0.088 . LdBPK_120030.1 17 QDPSYPK|DI 0.085 . LdBPK_120030.1 22 PKDIEQK|LT 0.074 . LdBPK_120030.1 33 GPAQAGK|QL 0.081 . LdBPK_120030.1 63 ILAVSYK|GG 0.067 . LdBPK_120030.1 73 VLAADSR|TS 0.077 . LdBPK_120030.1 83 GTYVVNR|AS 0.100 . LdBPK_120030.1 87 VNRASNK|LT 0.065 . LdBPK_120030.1 90 ASNKLTK|LT 0.080 . LdBPK_120030.1 94 LTKLTEK|IY 0.056 . LdBPK_120030.1 99 EKIYCCR|SG 0.137 . LdBPK_120030.1 112 TQALAER|VS 0.081 . LdBPK_120030.1 139 AANLFHK|MC 0.072 . LdBPK_120030.1 145 KMCYVNR|WN 0.099 . LdBPK_120030.1 176 SGGSCVK|LD 0.064 . LdBPK_120030.1 198 FFDANYK|PG 0.054 . LdBPK_120030.1 203 YKPGMSK|SE 0.079 . LdBPK_120030.1 212 CVAFCQR|AV 0.102 . LdBPK_120030.1 220 VAHAYSR|DG 0.116 . LdBPK_120030.1 229 SSGGLIR|TI 0.080 . LdBPK_120030.1 246 DLTVPWK|RS 0.055 . LdBPK_120030.1 247 LTVPWKR|SP 0.319 . LdBPK_120030.1 254 SPYCMEK|DP 0.071 . LdBPK_120030.1 257 CMEKDPK|YQ 0.067 . LdBPK_120030.1 273 PFSSSAK|VT 0.082 . LdBPK_120030.1 278 AKVTGNR|MS 0.108 . ____________________________^_________________

  • Fasta :-

    >LdBPK_120030.1 ATGCTCCAGCGCCCTGATCATACTCTTCTGCAGGATCCTTCGTATCCGAAGGATATTGAG CAGAAGCTGACGGAGAATGGGCCAGCACAGGCTGGCAAGCAGCTTTTTCAGCCGGATCTC GCCGTTATTGACCCGCAGCTGAGCGAGGCCGTCTCTCTGGGCACAACAATTCTTGCTGTA TCGTACAAAGGCGGTGTTGTTCTTGCCGCGGACTCGCGCACTTCGTCCGGCACGTATGTC GTGAATCGTGCCAGCAACAAGCTGACGAAGCTGACCGAGAAGATTTATTGCTGTCGAAGT GGTTCTGCCGCGGATACACAGGCTCTCGCTGAGCGCGTCTCGAACTACCTCGGTAGCTAT CAAACGGATATCGGCGCAGACGTGAACGTTGCCACGGCAGCGAATCTGTTTCACAAAATG TGCTACGTGAACAGATGGAACATCTCGGCGGGCATCATCGTCGCTGGGTACGACCCGATC AACGGAGGCTCAGTGTACAGCATCCCATCTGGCGGGTCATGCGTAAAGCTCGACTATGCA CTTGGCGGCAGCGGCTCCATTTTCCTGTACTCTTTCTTTGATGCCAACTATAAACCGGGT ATGTCGAAGAGCGAGTGCGTTGCCTTCTGCCAGCGTGCTGTTGCGCACGCGTACAGCCGC GACGGCTCCAGCGGCGGTCTGATCCGGACGATCACTCTCGACGCTGAAGAGGCAGAGGAC CTGACGGTCCCGTGGAAACGGTCGCCCTACTGCATGGAGAAGGATCCAAAATATCAGGTG CAGGCCGTGCAGAACCCGCCCTTCAGCAGCAGCGCCAAGGTTACCGGAAATCGGATGTCT TCGACAGGGTGA
  • Download Fasta

  • Fasta :-

    MLQRPDHTLLQDPSYPKDIEQKLTENGPAQAGKQLFQPDLAVIDPQLSEAVSLGTTILAV SYKGGVVLAADSRTSSGTYVVNRASNKLTKLTEKIYCCRSGSAADTQALAERVSNYLGSY QTDIGADVNVATAANLFHKMCYVNRWNISAGIIVAGYDPINGGSVYSIPSGGSCVKLDYA LGGSGSIFLYSFFDANYKPGMSKSECVAFCQRAVAHAYSRDGSSGGLIRTITLDAEEAED LTVPWKRSPYCMEKDPKYQVQAVQNPPFSSSAKVTGNRMSSTG

    No Results
  • title: active site
  • coordinates: T55,D71,R73,K87,S184,D221,S224,G225
No Results
No Results
IDSitePeptideScoreMethod
LdBPK_120030.161 SILAVSYKGG0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India