LdBPK_120190.1 | proteasome regulatory ATPase subunittcc1l8.3, putative

_IDPredictionOTHERSPmTPCS_Position
LdBPK_120190.1OTHER0.9926420.0030110.004347
No Results

  • Fasta :-

    >LdBPK_120190.1 MAISSVASVSATKASALAAKKAEKDAHASRSLFEEYEQLSKDIKNIQLKTMICRTETHQL MKEESAAKQEVKRIQAVPLVLGNFVEVVDSVRGIVSGTSGSQYFVRILSTLNKEHLKPNV SVGLHKSSNACVQLLPSETDATITLLNSSDRPDVTYSDVGGLDMQKQEIREAVELPLTHA GLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVARHTKASFIRVVGSEFVQKFLGEGPRKVR DVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRVLVELLTQMDGFDQTTNVKVI MATNRWDTLDPALLRPGRLDRKIEFPYPDRRQKRLVFQVCTSKMNLSPEVDLEDYVTRPE KLSGADIQSICQEAGMLAVRKNRYVILPRDIENAYRTVIKKTGDETYDFYS
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_120190.1.fa Sequence name : LdBPK_120190 Sequence length : 411 VALUES OF COMPUTED PARAMETERS Coef20 : 5.001 CoefTot : 1.471 ChDiff : 3 ZoneTo : 22 KR : 3 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.053 1.382 0.057 0.475 MesoH : -0.539 0.324 -0.369 0.176 MuHd_075 : 11.456 8.363 2.788 2.865 MuHd_095 : 20.848 14.252 6.500 4.745 MuHd_100 : 18.852 10.531 5.529 3.367 MuHd_105 : 16.929 8.264 4.763 1.873 Hmax_075 : 14.350 14.800 2.579 4.930 Hmax_095 : 10.325 17.100 1.591 5.280 Hmax_100 : 9.200 17.100 1.097 5.280 Hmax_105 : 8.225 13.800 0.550 2.427 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.6647 0.3353 DFMC : 0.5230 0.4770
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 411 LdBPK_120190.1 MAISSVASVSATKASALAAKKAEKDAHASRSLFEEYEQLSKDIKNIQLKTMICRTETHQLMKEESAAKQEVKRIQAVPLV 80 LGNFVEVVDSVRGIVSGTSGSQYFVRILSTLNKEHLKPNVSVGLHKSSNACVQLLPSETDATITLLNSSDRPDVTYSDVG 160 GLDMQKQEIREAVELPLTHAGLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVARHTKASFIRVVGSEFVQKFLGEGPRKVR 240 DVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRVLVELLTQMDGFDQTTNVKVIMATNRWDTLDPALLRPGRLD 320 RKIEFPYPDRRQKRLVFQVCTSKMNLSPEVDLEDYVTRPEKLSGADIQSICQEAGMLAVRKNRYVILPRDIENAYRTVIK 400 KTGDETYDFYS 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .............P.................................................................. 400 ........... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LdBPK_120190.1 13 ASVSATK|AS 0.058 . LdBPK_120190.1 20 ASALAAK|KA 0.089 . LdBPK_120190.1 21 SALAAKK|AE 0.087 . LdBPK_120190.1 24 AAKKAEK|DA 0.105 . LdBPK_120190.1 30 KDAHASR|SL 0.175 . LdBPK_120190.1 41 EYEQLSK|DI 0.062 . LdBPK_120190.1 44 QLSKDIK|NI 0.069 . LdBPK_120190.1 49 IKNIQLK|TM 0.066 . LdBPK_120190.1 54 LKTMICR|TE 0.090 . LdBPK_120190.1 62 ETHQLMK|EE 0.070 . LdBPK_120190.1 68 KEESAAK|QE 0.058 . LdBPK_120190.1 72 AAKQEVK|RI 0.070 . LdBPK_120190.1 73 AKQEVKR|IQ 0.148 . LdBPK_120190.1 92 EVVDSVR|GI 0.087 . LdBPK_120190.1 106 GSQYFVR|IL 0.129 . LdBPK_120190.1 113 ILSTLNK|EH 0.060 . LdBPK_120190.1 117 LNKEHLK|PN 0.067 . LdBPK_120190.1 126 VSVGLHK|SS 0.081 . LdBPK_120190.1 151 LLNSSDR|PD 0.088 . LdBPK_120190.1 166 GGLDMQK|QE 0.056 . LdBPK_120190.1 170 MQKQEIR|EA 0.097 . LdBPK_120190.1 192 IGIDPPR|GV 0.129 . LdBPK_120190.1 204 GPPGTGK|TM 0.057 . LdBPK_120190.1 209 GKTMLVK|AV 0.077 . LdBPK_120190.1 213 LVKAVAR|HT 0.122 . LdBPK_120190.1 216 AVARHTK|AS 0.150 . LdBPK_120190.1 221 TKASFIR|VV 0.223 . LdBPK_120190.1 230 GSEFVQK|FL 0.106 . LdBPK_120190.1 237 FLGEGPR|KV 0.133 . LdBPK_120190.1 238 LGEGPRK|VR 0.069 . LdBPK_120190.1 240 EGPRKVR|DV 0.382 . LdBPK_120190.1 244 KVRDVFR|LA 0.127 . LdBPK_120190.1 247 DVFRLAR|EN 0.193 . LdBPK_120190.1 265 VDSIATK|RF 0.069 . LdBPK_120190.1 266 DSIATKR|FD 0.204 . LdBPK_120190.1 275 AQTGADR|EV 0.099 . LdBPK_120190.1 279 ADREVQR|VL 0.106 . LdBPK_120190.1 298 DQTTNVK|VI 0.058 . LdBPK_120190.1 305 VIMATNR|WD 0.076 . LdBPK_120190.1 315 LDPALLR|PG 0.068 . LdBPK_120190.1 318 ALLRPGR|LD 0.212 . LdBPK_120190.1 321 RPGRLDR|KI 0.275 . LdBPK_120190.1 322 PGRLDRK|IE 0.070 . LdBPK_120190.1 330 EFPYPDR|RQ 0.065 . LdBPK_120190.1 331 FPYPDRR|QK 0.119 . LdBPK_120190.1 333 YPDRRQK|RL 0.118 . LdBPK_120190.1 334 PDRRQKR|LV 0.807 *ProP* LdBPK_120190.1 343 FQVCTSK|MN 0.057 . LdBPK_120190.1 358 LEDYVTR|PE 0.081 . LdBPK_120190.1 361 YVTRPEK|LS 0.126 . LdBPK_120190.1 380 AGMLAVR|KN 0.073 . LdBPK_120190.1 381 GMLAVRK|NR 0.081 . LdBPK_120190.1 383 LAVRKNR|YV 0.387 . LdBPK_120190.1 389 RYVILPR|DI 0.145 . LdBPK_120190.1 396 DIENAYR|TV 0.119 . LdBPK_120190.1 400 AYRTVIK|KT 0.089 . LdBPK_120190.1 401 YRTVIKK|TG 0.097 . ____________________________^_________________

  • Fasta :-

    >LdBPK_120190.1 ATGGCCATCTCCAGCGTTGCATCCGTGTCCGCCACGAAGGCCTCTGCTCTTGCCGCCAAG AAGGCGGAGAAGGACGCGCATGCCAGTCGTTCTCTCTTCGAGGAGTACGAGCAGCTCAGC AAGGATATCAAGAACATACAGCTCAAGACGATGATCTGCAGGACCGAGACGCACCAGCTC ATGAAGGAAGAGAGCGCGGCGAAGCAGGAGGTGAAGCGCATCCAGGCGGTGCCCCTCGTC CTCGGCAACTTCGTCGAGGTTGTGGACAGTGTCCGCGGTATCGTGAGCGGCACGAGCGGC TCGCAGTATTTTGTGCGCATCCTTTCGACCCTCAACAAGGAGCACCTCAAGCCGAACGTC AGCGTCGGCCTGCACAAGAGCAGCAACGCCTGCGTGCAGCTGCTGCCGAGCGAAACGGAC GCGACCATCACGCTGCTCAACTCGAGCGACAGACCCGACGTCACATACTCGGACGTGGGT GGTCTGGACATGCAGAAGCAGGAGATTCGCGAGGCCGTGGAGCTGCCGCTGACCCACGCG GGCCTGTACGAGCAGATCGGTATTGACCCTCCGCGCGGTGTGCTGCTCTACGGCCCGCCC GGCACCGGCAAGACCATGCTGGTGAAGGCCGTGGCGCGGCACACGAAGGCCTCCTTCATC CGCGTTGTCGGCAGCGAGTTTGTGCAGAAGTTCCTCGGCGAGGGCCCGCGCAAAGTGCGT GACGTGTTTCGTCTCGCCCGCGAGAACGCGCCATCCATCATCTTCATCGACGAGGTCGAC TCCATCGCGACCAAGCGTTTTGATGCTCAGACCGGCGCCGATCGTGAGGTGCAGCGTGTG CTTGTGGAGCTGCTTACCCAGATGGACGGCTTTGACCAGACAACCAACGTCAAGGTCATC ATGGCCACAAACCGCTGGGACACGCTGGACCCCGCGCTGCTGCGCCCTGGTCGCCTCGAC AGAAAGATCGAGTTCCCGTACCCTGACCGCCGCCAGAAGCGCCTCGTCTTCCAGGTATGC ACGTCGAAGATGAACCTGTCGCCTGAAGTGGACCTCGAAGACTACGTGACTCGGCCGGAG AAGCTCAGCGGCGCCGACATCCAGTCCATCTGCCAGGAAGCGGGTATGCTGGCGGTGCGA AAGAATCGATACGTCATTCTGCCGCGCGACATCGAAAATGCGTACAGGACGGTGATTAAG AAGACTGGGGATGAGACGTACGACTTCTACTCGTGA
  • Download Fasta

  • Fasta :-

    MAISSVASVSATKASALAAKKAEKDAHASRSLFEEYEQLSKDIKNIQLKTMICRTETHQL MKEESAAKQEVKRIQAVPLVLGNFVEVVDSVRGIVSGTSGSQYFVRILSTLNKEHLKPNV SVGLHKSSNACVQLLPSETDATITLLNSSDRPDVTYSDVGGLDMQKQEIREAVELPLTHA GLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVARHTKASFIRVVGSEFVQKFLGEGPRKVR DVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRVLVELLTQMDGFDQTTNVKVI MATNRWDTLDPALLRPGRLDRKIEFPYPDRRQKRLVFQVCTSKMNLSPEVDLEDYVTRPE KLSGADIQSICQEAGMLAVRKNRYVILPRDIENAYRTVIKKTGDETYDFYS

  • title: ATP binding site
  • coordinates: P199,P200,G201,T202,G203,K204,T205,M206,D257,N304
No Results
No Results
IDSitePeptideScoreMethod
LdBPK_120190.18 SSSVASVSAT0.993unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India