LdBPK_131040.1 | Alpha/beta hydrolase family, putative

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_IDPredictionOTHERSPmTPCS_Position
LdBPK_131040.1OTHER0.9866020.0003450.013053
No Results

  • Fasta :-

    >LdBPK_131040.1 MQRGADVRPIKLAKKVFSANTVCSTAASQLYVAHGLLGNSGNWATASRHLVEHSALKDKL RRAIAVDMRNHGSSAHSSDHTNAALASDLEALVLREQQELGRAFRDPASCTTRNAILIGH SMGGLSVMGALLRRANEDRLLTSWADHCDDAGSASSYGAWPAEYRRQCIAGMRAVNEEFG FASSQPIAEVLFNNRGASSSPSTGNGNASRIPLLGRVAGAVIVDVTPTMRLGEQRSCADN VKETLERMTQVRLDGIHSYKDATAELIRVGMADQEMRDFVATNIVLDPKDKSKSAQWKCN LPVLAGDYGSFQPSITRWFTSSATTMGQAPSAAAPRLCTLPVMFVFGGKSPYNEPDHRQH ISRFFSNATQVEVPGAGHFVHYEKPKEFTDAVAPFIASLISQP
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_131040.1.fa Sequence name : LdBPK_131040 Sequence length : 403 VALUES OF COMPUTED PARAMETERS Coef20 : 4.090 CoefTot : -0.474 ChDiff : 4 ZoneTo : 51 KR : 6 DE : 1 CleavSite : 58 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.800 1.624 0.230 0.668 MesoH : -0.288 0.100 -0.341 0.152 MuHd_075 : 32.347 26.728 10.497 8.294 MuHd_095 : 35.167 16.533 8.679 7.508 MuHd_100 : 26.288 18.077 7.490 5.638 MuHd_105 : 30.802 22.105 10.186 7.592 Hmax_075 : 16.917 18.783 3.389 5.915 Hmax_095 : 9.975 9.800 0.154 3.981 Hmax_100 : 6.600 14.400 1.963 3.480 Hmax_105 : 13.300 21.350 4.302 5.052 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1147 0.8853 DFMC : 0.1585 0.8415 This protein is probably imported in mitochondria. f(Ser) = 0.0980 f(Arg) = 0.0588 CMi = 0.64350 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 403 LdBPK_131040.1 MQRGADVRPIKLAKKVFSANTVCSTAASQLYVAHGLLGNSGNWATASRHLVEHSALKDKLRRAIAVDMRNHGSSAHSSDH 80 TNAALASDLEALVLREQQELGRAFRDPASCTTRNAILIGHSMGGLSVMGALLRRANEDRLLTSWADHCDDAGSASSYGAW 160 PAEYRRQCIAGMRAVNEEFGFASSQPIAEVLFNNRGASSSPSTGNGNASRIPLLGRVAGAVIVDVTPTMRLGEQRSCADN 240 VKETLERMTQVRLDGIHSYKDATAELIRVGMADQEMRDFVATNIVLDPKDKSKSAQWKCNLPVLAGDYGSFQPSITRWFT 320 SSATTMGQAPSAAAPRLCTLPVMFVFGGKSPYNEPDHRQHISRFFSNATQVEVPGAGHFVHYEKPKEFTDAVAPFIASLI 400 SQP 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_131040.1 3 ----MQR|GA 0.104 . LdBPK_131040.1 8 QRGADVR|PI 0.099 . LdBPK_131040.1 11 ADVRPIK|LA 0.168 . LdBPK_131040.1 14 RPIKLAK|KV 0.088 . LdBPK_131040.1 15 PIKLAKK|VF 0.091 . LdBPK_131040.1 48 NWATASR|HL 0.080 . LdBPK_131040.1 57 VEHSALK|DK 0.058 . LdBPK_131040.1 59 HSALKDK|LR 0.067 . LdBPK_131040.1 61 ALKDKLR|RA 0.115 . LdBPK_131040.1 62 LKDKLRR|AI 0.135 . LdBPK_131040.1 69 AIAVDMR|NH 0.103 . LdBPK_131040.1 95 LEALVLR|EQ 0.086 . LdBPK_131040.1 102 EQQELGR|AF 0.079 . LdBPK_131040.1 105 ELGRAFR|DP 0.237 . LdBPK_131040.1 113 PASCTTR|NA 0.147 . LdBPK_131040.1 133 VMGALLR|RA 0.076 . LdBPK_131040.1 134 MGALLRR|AN 0.166 . LdBPK_131040.1 139 RRANEDR|LL 0.104 . LdBPK_131040.1 165 AWPAEYR|RQ 0.081 . LdBPK_131040.1 166 WPAEYRR|QC 0.196 . LdBPK_131040.1 173 QCIAGMR|AV 0.112 . LdBPK_131040.1 195 EVLFNNR|GA 0.105 . LdBPK_131040.1 210 GNGNASR|IP 0.083 . LdBPK_131040.1 216 RIPLLGR|VA 0.123 . LdBPK_131040.1 230 DVTPTMR|LG 0.067 . LdBPK_131040.1 235 MRLGEQR|SC 0.155 . LdBPK_131040.1 242 SCADNVK|ET 0.064 . LdBPK_131040.1 247 VKETLER|MT 0.099 . LdBPK_131040.1 252 ERMTQVR|LD 0.096 . LdBPK_131040.1 260 DGIHSYK|DA 0.096 . LdBPK_131040.1 268 ATAELIR|VG 0.076 . LdBPK_131040.1 277 MADQEMR|DF 0.093 . LdBPK_131040.1 289 NIVLDPK|DK 0.074 . LdBPK_131040.1 291 VLDPKDK|SK 0.088 . LdBPK_131040.1 293 DPKDKSK|SA 0.106 . LdBPK_131040.1 298 SKSAQWK|CN 0.096 . LdBPK_131040.1 317 FQPSITR|WF 0.079 . LdBPK_131040.1 336 PSAAAPR|LC 0.076 . LdBPK_131040.1 349 MFVFGGK|SP 0.072 . LdBPK_131040.1 358 YNEPDHR|QH 0.078 . LdBPK_131040.1 363 HRQHISR|FF 0.191 . LdBPK_131040.1 384 HFVHYEK|PK 0.060 . LdBPK_131040.1 386 VHYEKPK|EF 0.078 . ____________________________^_________________

  • Fasta :-

    >LdBPK_131040.1 ATGCAACGGGGGGCCGACGTGCGCCCGATAAAACTGGCGAAGAAGGTGTTCAGCGCCAAT ACGGTGTGTTCAACAGCGGCGAGTCAGCTGTACGTGGCCCACGGTCTCCTTGGCAATTCG GGCAACTGGGCAACCGCCTCGCGCCACCTTGTCGAGCACTCTGCTCTCAAAGACAAGCTC CGGCGCGCGATCGCGGTGGACATGCGCAACCACGGCAGCAGTGCGCACAGTAGTGACCAC ACAAACGCGGCGCTTGCATCCGATCTCGAAGCGCTGGTGCTTCGCGAACAGCAGGAGCTG GGCCGCGCCTTTCGTGACCCAGCCTCGTGCACGACACGGAACGCGATCTTGATTGGGCAC AGCATGGGCGGCTTGTCGGTGATGGGCGCGCTGTTGCGGCGCGCCAACGAAGATCGGCTG CTGACATCGTGGGCTGATCACTGCGACGACGCGGGCTCGGCGTCGTCATACGGGGCGTGG CCGGCGGAGTACCGTCGTCAGTGCATTGCTGGAATGCGTGCCGTGAACGAGGAGTTTGGC TTCGCTTCCTCGCAGCCCATCGCGGAAGTGCTCTTCAATAACCGTGGTGCGTCCTCCTCA CCATCAACGGGCAACGGTAATGCTTCCCGCATCCCGCTGCTGGGCCGCGTTGCTGGTGCT GTCATTGTGGACGTGACGCCAACAATGCGGCTGGGTGAACAGCGCAGCTGCGCTGACAAC GTCAAGGAGACGCTCGAGCGCATGACGCAGGTGCGGCTGGACGGGATTCACAGCTACAAG GACGCAACGGCGGAGCTGATCCGGGTCGGCATGGCTGACCAGGAAATGCGCGATTTTGTG GCAACGAACATCGTCCTTGATCCTAAAGACAAGTCGAAGTCGGCGCAGTGGAAGTGCAAT CTGCCGGTCCTCGCCGGCGACTACGGCAGCTTCCAGCCATCCATCACTCGCTGGTTTACG TCGTCGGCAACGACGATGGGGCAAGCGCCCTCGGCTGCCGCGCCGCGGCTGTGCACGCTT CCTGTCATGTTCGTCTTTGGTGGTAAGTCGCCTTACAACGAGCCGGATCACCGCCAGCAC ATTTCGCGCTTCTTCTCCAACGCAACGCAGGTGGAGGTGCCCGGCGCCGGGCACTTTGTG CATTACGAGAAGCCGAAGGAGTTCACCGACGCCGTGGCGCCGTTCATCGCGTCCCTCATT TCACAGCCGTGA
  • Download Fasta

  • Fasta :-

    MQRGADVRPIKLAKKVFSANTVCSTAASQLYVAHGLLGNSGNWATASRHLVEHSALKDKL RRAIAVDMRNHGSSAHSSDHTNAALASDLEALVLREQQELGRAFRDPASCTTRNAILIGH SMGGLSVMGALLRRANEDRLLTSWADHCDDAGSASSYGAWPAEYRRQCIAGMRAVNEEFG FASSQPIAEVLFNNRGASSSPSTGNGNASRIPLLGRVAGAVIVDVTPTMRLGEQRSCADN VKETLERMTQVRLDGIHSYKDATAELIRVGMADQEMRDFVATNIVLDPKDKSKSAQWKCN LPVLAGDYGSFQPSITRWFTSSATTMGQAPSAAAPRLCTLPVMFVFGGKSPYNEPDHRQH ISRFFSNATQVEVPGAGHFVHYEKPKEFTDAVAPFIASLISQP

    No Results
No Results
No Results
IDSitePeptideScoreMethod
LdBPK_131040.1258 SDGIHSYKDA0.997unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India