LdBPK_150090.1 | ATP-dependent protease ATPase subunit HslU1, putative

_IDPredictionOTHERSPmTPCS_Position
LdBPK_150090.1OTHER0.9990020.0000320.000966
No Results

  • Fasta :-

    >LdBPK_150090.1 MRPRELMKELDRYIVGQSEAKKAVSVALRNRWRRHQVPSDIREEIAPKNILMIGPTGVGK TEIARRLAKLVDAPFVKVEATKFTEVGFHGRDVESIIEDLYKASLSQTKQNIRRQHEEEA KLKAEDRILKSLAGVSDGFREHLRSGALDDIEVMVELQEKKEKPKTASGEGVFISLDIPS MMGGQRQQTVKKVMKIKDAFPAVLQEELDKMMDTEDVTAEALRACEEDGIVVIDEIDKIV TAAGGYKGHQASAEGVQQDLLPLVEGTTVSTKFNVQVKTDKILFICSGAFHSVKPSDMLA ELQGRLPIRVELQQLSKEDFHRIITEPRFNLIAQHKAMMATEGVDLIFEDDALWEIASIA AYINSTVQNIGARRLITITEKVVEEISFEGPERKSEKFVIDAAYVKKAVDKMVKKVDIKK FIL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_150090.1.fa Sequence name : LdBPK_150090 Sequence length : 423 VALUES OF COMPUTED PARAMETERS Coef20 : 3.710 CoefTot : 0.017 ChDiff : -4 ZoneTo : 4 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.653 1.053 -0.039 0.470 MesoH : -0.744 0.252 -0.442 0.193 MuHd_075 : 25.388 23.152 7.554 7.665 MuHd_095 : 33.649 19.603 8.931 6.904 MuHd_100 : 34.686 16.598 8.461 6.733 MuHd_105 : 35.647 14.125 8.282 6.735 Hmax_075 : 7.583 17.150 0.737 5.367 Hmax_095 : 5.163 10.763 0.176 3.833 Hmax_100 : 8.400 8.100 -0.031 3.770 Hmax_105 : 7.100 7.600 -0.298 3.770 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.2934 0.7066 DFMC : 0.5099 0.4901
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 423 LdBPK_150090.1 MRPRELMKELDRYIVGQSEAKKAVSVALRNRWRRHQVPSDIREEIAPKNILMIGPTGVGKTEIARRLAKLVDAPFVKVEA 80 TKFTEVGFHGRDVESIIEDLYKASLSQTKQNIRRQHEEEAKLKAEDRILKSLAGVSDGFREHLRSGALDDIEVMVELQEK 160 KEKPKTASGEGVFISLDIPSMMGGQRQQTVKKVMKIKDAFPAVLQEELDKMMDTEDVTAEALRACEEDGIVVIDEIDKIV 240 TAAGGYKGHQASAEGVQQDLLPLVEGTTVSTKFNVQVKTDKILFICSGAFHSVKPSDMLAELQGRLPIRVELQQLSKEDF 320 HRIITEPRFNLIAQHKAMMATEGVDLIFEDDALWEIASIAAYINSTVQNIGARRLITITEKVVEEISFEGPERKSEKFVI 400 DAAYVKKAVDKMVKKVDIKKFIL 480 .................................P.............................................. 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ....................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LdBPK_150090.1 2 -----MR|PR 0.077 . LdBPK_150090.1 4 ---MRPR|EL 0.118 . LdBPK_150090.1 8 RPRELMK|EL 0.087 . LdBPK_150090.1 12 LMKELDR|YI 0.085 . LdBPK_150090.1 21 VGQSEAK|KA 0.064 . LdBPK_150090.1 22 GQSEAKK|AV 0.257 . LdBPK_150090.1 29 AVSVALR|NR 0.077 . LdBPK_150090.1 31 SVALRNR|WR 0.101 . LdBPK_150090.1 33 ALRNRWR|RH 0.071 . LdBPK_150090.1 34 LRNRWRR|HQ 0.595 *ProP* LdBPK_150090.1 42 QVPSDIR|EE 0.064 . LdBPK_150090.1 48 REEIAPK|NI 0.070 . LdBPK_150090.1 60 GPTGVGK|TE 0.060 . LdBPK_150090.1 65 GKTEIAR|RL 0.082 . LdBPK_150090.1 66 KTEIARR|LA 0.120 . LdBPK_150090.1 69 IARRLAK|LV 0.241 . LdBPK_150090.1 77 VDAPFVK|VE 0.061 . LdBPK_150090.1 82 VKVEATK|FT 0.093 . LdBPK_150090.1 91 EVGFHGR|DV 0.215 . LdBPK_150090.1 102 IIEDLYK|AS 0.064 . LdBPK_150090.1 109 ASLSQTK|QN 0.067 . LdBPK_150090.1 113 QTKQNIR|RQ 0.079 . LdBPK_150090.1 114 TKQNIRR|QH 0.174 . LdBPK_150090.1 121 QHEEEAK|LK 0.058 . LdBPK_150090.1 123 EEEAKLK|AE 0.075 . LdBPK_150090.1 127 KLKAEDR|IL 0.083 . LdBPK_150090.1 130 AEDRILK|SL 0.167 . LdBPK_150090.1 140 GVSDGFR|EH 0.076 . LdBPK_150090.1 144 GFREHLR|SG 0.092 . LdBPK_150090.1 160 MVELQEK|KE 0.058 . LdBPK_150090.1 161 VELQEKK|EK 0.073 . LdBPK_150090.1 163 LQEKKEK|PK 0.078 . LdBPK_150090.1 165 EKKEKPK|TA 0.092 . LdBPK_150090.1 186 SMMGGQR|QQ 0.089 . LdBPK_150090.1 191 QRQQTVK|KV 0.107 . LdBPK_150090.1 192 RQQTVKK|VM 0.092 . LdBPK_150090.1 195 TVKKVMK|IK 0.073 . LdBPK_150090.1 197 KKVMKIK|DA 0.120 . LdBPK_150090.1 210 LQEELDK|MM 0.069 . LdBPK_150090.1 223 VTAEALR|AC 0.087 . LdBPK_150090.1 238 VIDEIDK|IV 0.070 . LdBPK_150090.1 247 TAAGGYK|GH 0.070 . LdBPK_150090.1 272 GTTVSTK|FN 0.070 . LdBPK_150090.1 278 KFNVQVK|TD 0.064 . LdBPK_150090.1 281 VQVKTDK|IL 0.065 . LdBPK_150090.1 294 GAFHSVK|PS 0.065 . LdBPK_150090.1 305 LAELQGR|LP 0.086 . LdBPK_150090.1 309 QGRLPIR|VE 0.089 . LdBPK_150090.1 317 ELQQLSK|ED 0.060 . LdBPK_150090.1 322 SKEDFHR|II 0.112 . LdBPK_150090.1 328 RIITEPR|FN 0.101 . LdBPK_150090.1 336 NLIAQHK|AM 0.072 . LdBPK_150090.1 373 VQNIGAR|RL 0.093 . LdBPK_150090.1 374 QNIGARR|LI 0.139 . LdBPK_150090.1 381 LITITEK|VV 0.068 . LdBPK_150090.1 393 SFEGPER|KS 0.088 . LdBPK_150090.1 394 FEGPERK|SE 0.110 . LdBPK_150090.1 397 PERKSEK|FV 0.110 . LdBPK_150090.1 406 IDAAYVK|KA 0.064 . LdBPK_150090.1 407 DAAYVKK|AV 0.211 . LdBPK_150090.1 411 VKKAVDK|MV 0.088 . LdBPK_150090.1 414 AVDKMVK|KV 0.073 . LdBPK_150090.1 415 VDKMVKK|VD 0.091 . LdBPK_150090.1 419 VKKVDIK|KF 0.060 . LdBPK_150090.1 420 KKVDIKK|FI 0.108 . ____________________________^_________________

  • Fasta :-

    >LdBPK_150090.1 ATGCGCCCACGCGAGTTGATGAAGGAGCTGGACCGCTACATTGTGGGCCAGAGCGAGGCG AAGAAGGCTGTGTCGGTGGCGCTGCGCAATCGCTGGCGCCGCCACCAGGTGCCGAGCGAT ATTCGCGAGGAAATCGCGCCAAAGAACATTCTTATGATTGGTCCAACCGGCGTGGGCAAG ACGGAGATTGCCCGTCGCCTCGCCAAGCTCGTAGATGCTCCGTTCGTCAAGGTGGAGGCC ACCAAGTTCACCGAGGTCGGCTTCCACGGCCGCGACGTGGAGAGCATCATCGAGGACCTC TATAAGGCCTCTTTGTCGCAGACCAAGCAGAACATCCGTCGCCAGCATGAGGAAGAGGCG AAGTTGAAGGCGGAGGACCGCATTCTTAAGTCTTTGGCCGGCGTGTCAGACGGCTTCCGG GAGCACCTGCGCAGCGGGGCATTGGACGACATCGAGGTCATGGTGGAGCTTCAAGAGAAG AAAGAAAAACCCAAGACAGCGAGCGGCGAGGGCGTCTTCATTTCTCTTGACATCCCTTCC ATGATGGGTGGGCAACGCCAGCAGACGGTGAAGAAGGTGATGAAGATCAAGGACGCTTTC CCGGCTGTGCTGCAGGAGGAGCTGGACAAGATGATGGACACCGAGGACGTCACGGCTGAG GCGCTGCGCGCCTGCGAGGAGGACGGCATCGTTGTCATTGACGAGATCGACAAGATCGTG ACGGCAGCGGGCGGGTACAAGGGCCACCAGGCTTCCGCCGAGGGCGTCCAGCAGGATCTG CTACCGTTGGTAGAGGGCACCACGGTGTCGACGAAGTTTAATGTGCAGGTGAAGACGGAC AAGATCTTGTTTATCTGCAGCGGCGCCTTCCACAGCGTTAAGCCGTCCGACATGCTGGCG GAGCTGCAGGGCCGTCTGCCCATCCGCGTCGAGCTCCAGCAGCTGAGCAAGGAAGATTTT CACCGCATCATCACCGAGCCTCGTTTCAACCTTATTGCGCAGCACAAGGCGATGATGGCT ACAGAGGGCGTCGACCTCATCTTTGAGGACGACGCGCTCTGGGAGATTGCTAGCATCGCC GCGTACATCAACTCGACAGTGCAGAACATCGGCGCCCGCCGCCTCATCACAATCACGGAG AAGGTTGTTGAGGAGATCAGCTTCGAGGGACCGGAGCGAAAGAGCGAGAAGTTTGTCATT GACGCCGCCTACGTCAAGAAGGCCGTGGACAAGATGGTCAAGAAAGTGGACATCAAGAAG TTCATCTTGTGA
  • Download Fasta

  • Fasta :-

    MRPRELMKELDRYIVGQSEAKKAVSVALRNRWRRHQVPSDIREEIAPKNILMIGPTGVGK TEIARRLAKLVDAPFVKVEATKFTEVGFHGRDVESIIEDLYKASLSQTKQNIRRQHEEEA KLKAEDRILKSLAGVSDGFREHLRSGALDDIEVMVELQEKKEKPKTASGEGVFISLDIPS MMGGQRQQTVKKVMKIKDAFPAVLQEELDKMMDTEDVTAEALRACEEDGIVVIDEIDKIV TAAGGYKGHQASAEGVQQDLLPLVEGTTVSTKFNVQVKTDKILFICSGAFHSVKPSDMLA ELQGRLPIRVELQQLSKEDFHRIITEPRFNLIAQHKAMMATEGVDLIFEDDALWEIASIA AYINSTVQNIGARRLITITEKVVEEISFEGPERKSEKFVIDAAYVKKAVDKMVKKVDIKK FIL

  • title: ATP binding site
  • coordinates: P55,T56,G57,V58,G59,K60,T61,E62
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_150090.1316 SLQQLSKEDF0.994unspLdBPK_150090.1395 SPERKSEKFV0.995unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India