LdBPK_151600.1 | presenilin-like aspartic peptidase, putative

_IDPredictionOTHERSPmTPCS_Position
LdBPK_151600.1OTHER0.9998730.0000100.000118
No Results

  • Fasta :-

    >LdBPK_151600.1 MSSRPLLDDAHLSRGVGIRFVSLVVPVTATMLAVVWSLSCLSPIYVNSQVPPLPVVVNEN DAATAGEKFVYSLVAALIVVGCVVAATFATVLLYHFHLQFVLYGWLAFSAVSMFFMLLWI WLDLFCTYFQIPYNVISMGIFVWNFGVVGLIALFYYSHPTVTQVYLVIASILTAWSLTAL PEWSTWSLLICIATYDILAVLWQQGPLHRLIKIAQERDEPIPGFVYSSAHSIVPITQPAT ASSARVPATAAESFMWTVQHATPFKLGLGDFIFYSLLVGRASFSGFVSWSFCMVSILAGM LGTLLSLLLFRNSLRALPALPCSIFLSTVVFVLCRLIVESLSSFTSHHLLVL
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_151600.1.fa Sequence name : LdBPK_151600 Sequence length : 352 VALUES OF COMPUTED PARAMETERS Coef20 : 4.107 CoefTot : 0.350 ChDiff : -1 ZoneTo : 7 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.529 2.724 0.557 0.861 MesoH : 1.634 1.680 0.171 0.685 MuHd_075 : 42.310 20.629 8.014 8.526 MuHd_095 : 12.169 4.210 3.334 1.681 MuHd_100 : 17.162 6.004 4.777 2.956 MuHd_105 : 21.911 9.999 6.268 4.290 Hmax_075 : 11.375 11.463 0.506 4.323 Hmax_095 : 1.400 6.475 -0.300 1.908 Hmax_100 : 0.600 8.200 -0.224 2.160 Hmax_105 : 10.967 9.100 1.789 3.430 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7271 0.2729 DFMC : 0.6999 0.3001
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 352 LdBPK_151600.1 MSSRPLLDDAHLSRGVGIRFVSLVVPVTATMLAVVWSLSCLSPIYVNSQVPPLPVVVNENDAATAGEKFVYSLVAALIVV 80 GCVVAATFATVLLYHFHLQFVLYGWLAFSAVSMFFMLLWIWLDLFCTYFQIPYNVISMGIFVWNFGVVGLIALFYYSHPT 160 VTQVYLVIASILTAWSLTALPEWSTWSLLICIATYDILAVLWQQGPLHRLIKIAQERDEPIPGFVYSSAHSIVPITQPAT 240 ASSARVPATAAESFMWTVQHATPFKLGLGDFIFYSLLVGRASFSGFVSWSFCMVSILAGMLGTLLSLLLFRNSLRALPAL 320 PCSIFLSTVVFVLCRLIVESLSSFTSHHLLVL 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................ 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_151600.1 4 ---MSSR|PL 0.084 . LdBPK_151600.1 14 DDAHLSR|GV 0.166 . LdBPK_151600.1 19 SRGVGIR|FV 0.247 . LdBPK_151600.1 68 AATAGEK|FV 0.069 . LdBPK_151600.1 209 QQGPLHR|LI 0.089 . LdBPK_151600.1 212 PLHRLIK|IA 0.129 . LdBPK_151600.1 217 IKIAQER|DE 0.093 . LdBPK_151600.1 245 ATASSAR|VP 0.095 . LdBPK_151600.1 265 QHATPFK|LG 0.056 . LdBPK_151600.1 280 YSLLVGR|AS 0.098 . LdBPK_151600.1 311 LSLLLFR|NS 0.082 . LdBPK_151600.1 315 LFRNSLR|AL 0.089 . LdBPK_151600.1 335 VVFVLCR|LI 0.084 . ____________________________^_________________

  • Fasta :-

    >LdBPK_151600.1 ATGTCGAGCAGGCCTCTCTTAGACGACGCACACCTCTCACGTGGCGTGGGTATCCGGTTT GTGTCGCTTGTCGTACCTGTGACTGCCACCATGTTGGCCGTGGTGTGGAGCCTCTCATGC CTCTCGCCTATCTACGTGAACAGCCAGGTGCCGCCTCTGCCGGTGGTGGTAAACGAGAAT GACGCGGCCACTGCGGGCGAGAAGTTTGTGTACTCACTGGTGGCGGCCCTGATCGTCGTT GGGTGCGTCGTGGCCGCAACTTTTGCAACTGTGCTGCTCTATCACTTCCATCTCCAGTTT GTATTGTATGGCTGGCTGGCGTTTTCGGCAGTGTCAATGTTTTTTATGCTGCTGTGGATT TGGCTGGACTTGTTCTGCACATATTTCCAAATCCCTTACAACGTCATTTCGATGGGCATC TTTGTGTGGAACTTCGGCGTGGTGGGCCTCATCGCCCTCTTTTACTACTCTCACCCTACT GTGACGCAGGTGTATTTGGTCATCGCCTCCATCTTGACTGCGTGGTCGCTGACGGCGCTG CCGGAATGGTCGACGTGGTCGTTGCTGATCTGCATCGCCACGTACGACATTCTTGCAGTT CTCTGGCAGCAGGGGCCACTGCATCGGCTAATCAAGATAGCTCAGGAACGCGACGAGCCG ATACCCGGATTCGTCTACAGCAGTGCACACAGCATTGTTCCGATTACGCAGCCTGCAACA GCGAGCTCGGCGCGTGTGCCGGCAACGGCAGCCGAGTCCTTCATGTGGACGGTGCAGCAC GCCACTCCATTCAAGCTGGGCCTTGGCGACTTTATCTTTTACAGCCTTCTTGTTGGCCGT GCCTCATTTTCTGGCTTTGTGTCGTGGAGTTTCTGTATGGTGAGCATCCTGGCGGGTATG CTGGGCACGCTGCTGTCCTTGCTGCTTTTCCGCAACTCGCTGCGCGCGCTGCCAGCTCTG CCGTGCTCCATTTTTCTCTCTACTGTCGTCTTTGTGCTCTGCAGGCTAATTGTGGAGTCG CTGAGCTCCTTCACGAGTCATCACCTGTTGGTGCTGTAA
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  • Fasta :-

    MSSRPLLDDAHLSRGVGIRFVSLVVPVTATMLAVVWSLSCLSPIYVNSQVPPLPVVVNEN DAATAGEKFVYSLVAALIVVGCVVAATFATVLLYHFHLQFVLYGWLAFSAVSMFFMLLWI WLDLFCTYFQIPYNVISMGIFVWNFGVVGLIALFYYSHPTVTQVYLVIASILTAWSLTAL PEWSTWSLLICIATYDILAVLWQQGPLHRLIKIAQERDEPIPGFVYSSAHSIVPITQPAT ASSARVPATAAESFMWTVQHATPFKLGLGDFIFYSLLVGRASFSGFVSWSFCMVSILAGM LGTLLSLLLFRNSLRALPALPCSIFLSTVVFVLCRLIVESLSSFTSHHLLVL

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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India