LdBPK_160300.1 | proteasome 26S non-ATPase subunit 9, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0005515      

  • Computed_GO_Functions:  protein binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0005737      

  • Curated_GO_Components:  cytoplasm      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LdBPK_160300.1OTHER0.9999890.0000050.000006
No Results

  • Fasta :-

    >LdBPK_160300.1 MNGHSIEDIVEIEDYRAPAVESTIGDMDKEALREELRRLDAQKAALEAKLTDALQYLAST PVGLRGRLLDDEGFPRNDCDLYAVRTARNTADSTRNDLRVLNEKIYSLLNELHLQTQEEA QLQMVQDAAARRQRQAAAEKRAQRMAEVQRVSRLKPCLVVAKVDANSPAEEAGLSVGMQI LQYGAVTQTELIAEGLQALARETSTHEGAPIAVWVRKPGELQDDPSELVLVPQRWQGPGL LGCALDMVGDEALCESR
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_160300.1.fa Sequence name : LdBPK_160300 Sequence length : 257 VALUES OF COMPUTED PARAMETERS Coef20 : 3.135 CoefTot : -0.511 ChDiff : -13 ZoneTo : 6 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.724 0.976 0.028 0.422 MesoH : -0.735 0.190 -0.414 0.183 MuHd_075 : 18.158 9.770 4.743 2.275 MuHd_095 : 16.000 14.827 4.885 3.350 MuHd_100 : 11.912 14.499 5.013 2.321 MuHd_105 : 12.514 14.292 5.825 1.816 Hmax_075 : 0.933 5.833 -1.143 2.893 Hmax_095 : 1.225 7.962 -1.298 3.027 Hmax_100 : -1.600 7.600 -1.340 3.480 Hmax_105 : -4.500 6.600 -2.101 2.473 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9734 0.0266 DFMC : 0.9689 0.0311
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 257 LdBPK_160300.1 MNGHSIEDIVEIEDYRAPAVESTIGDMDKEALREELRRLDAQKAALEAKLTDALQYLASTPVGLRGRLLDDEGFPRNDCD 80 LYAVRTARNTADSTRNDLRVLNEKIYSLLNELHLQTQEEAQLQMVQDAAARRQRQAAAEKRAQRMAEVQRVSRLKPCLVV 160 AKVDANSPAEEAGLSVGMQILQYGAVTQTELIAEGLQALARETSTHEGAPIAVWVRKPGELQDDPSELVLVPQRWQGPGL 240 LGCALDMVGDEALCESR 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_160300.1 16 VEIEDYR|AP 0.069 . LdBPK_160300.1 29 TIGDMDK|EA 0.071 . LdBPK_160300.1 33 MDKEALR|EE 0.070 . LdBPK_160300.1 37 ALREELR|RL 0.090 . LdBPK_160300.1 38 LREELRR|LD 0.129 . LdBPK_160300.1 43 RRLDAQK|AA 0.074 . LdBPK_160300.1 49 KAALEAK|LT 0.077 . LdBPK_160300.1 65 STPVGLR|GR 0.062 . LdBPK_160300.1 67 PVGLRGR|LL 0.095 . LdBPK_160300.1 76 DDEGFPR|ND 0.082 . LdBPK_160300.1 85 CDLYAVR|TA 0.077 . LdBPK_160300.1 88 YAVRTAR|NT 0.300 . LdBPK_160300.1 95 NTADSTR|ND 0.092 . LdBPK_160300.1 99 STRNDLR|VL 0.097 . LdBPK_160300.1 104 LRVLNEK|IY 0.062 . LdBPK_160300.1 131 VQDAAAR|RQ 0.075 . LdBPK_160300.1 132 QDAAARR|QR 0.124 . LdBPK_160300.1 134 AAARRQR|QA 0.394 . LdBPK_160300.1 140 RQAAAEK|RA 0.064 . LdBPK_160300.1 141 QAAAEKR|AQ 0.233 . LdBPK_160300.1 144 AEKRAQR|MA 0.432 . LdBPK_160300.1 150 RMAEVQR|VS 0.081 . LdBPK_160300.1 153 EVQRVSR|LK 0.142 . LdBPK_160300.1 155 QRVSRLK|PC 0.064 . LdBPK_160300.1 162 PCLVVAK|VD 0.059 . LdBPK_160300.1 201 GLQALAR|ET 0.148 . LdBPK_160300.1 216 PIAVWVR|KP 0.095 . LdBPK_160300.1 217 IAVWVRK|PG 0.090 . LdBPK_160300.1 234 LVLVPQR|WQ 0.106 . LdBPK_160300.1 257 EALCESR|-- 0.077 . ____________________________^_________________

  • Fasta :-

    >LdBPK_160300.1 ATGAACGGACACAGCATCGAGGACATTGTCGAGATCGAGGACTACCGCGCCCCCGCGGTT GAATCCACCATAGGCGATATGGACAAGGAAGCCCTTCGTGAAGAGCTGCGTCGCCTGGAC GCACAGAAGGCGGCCCTCGAGGCGAAGCTGACGGATGCACTTCAGTATCTCGCATCGACC CCTGTTGGGCTTCGCGGCCGCTTGCTTGACGATGAGGGGTTCCCGCGAAACGACTGCGAC CTGTACGCGGTTCGCACAGCCCGGAACACGGCCGACTCCACGCGCAACGACCTGCGCGTG CTGAACGAAAAAATATACAGCCTTCTCAATGAGCTGCACCTCCAGACGCAAGAGGAGGCG CAGCTACAGATGGTACAGGACGCCGCTGCCCGCCGACAACGACAGGCAGCGGCGGAGAAG CGGGCGCAGCGCATGGCAGAGGTGCAGCGTGTCTCGCGGCTGAAGCCGTGTCTGGTGGTG GCGAAAGTGGACGCCAATAGCCCAGCGGAGGAGGCCGGCCTCTCCGTCGGCATGCAGATC CTGCAATACGGCGCCGTGACGCAGACGGAGCTGATCGCGGAGGGCCTGCAGGCGCTGGCG AGGGAAACATCCACCCACGAAGGGGCGCCGATTGCGGTGTGGGTGCGGAAGCCAGGAGAG CTGCAAGATGATCCGTCCGAGCTTGTACTGGTGCCGCAGCGCTGGCAAGGGCCCGGGCTG CTCGGCTGCGCCTTGGACATGGTCGGGGACGAAGCTCTGTGTGAAAGTCGCTGA
  • Download Fasta

  • Fasta :-

    MNGHSIEDIVEIEDYRAPAVESTIGDMDKEALREELRRLDAQKAALEAKLTDALQYLAST PVGLRGRLLDDEGFPRNDCDLYAVRTARNTADSTRNDLRVLNEKIYSLLNELHLQTQEEA QLQMVQDAAARRQRQAAAEKRAQRMAEVQRVSRLKPCLVVAKVDANSPAEEAGLSVGMQI LQYGAVTQTELIAEGLQALARETSTHEGAPIAVWVRKPGELQDDPSELVLVPQRWQGPGL LGCALDMVGDEALCESR

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_160300.1167 SVDANSPAEE0.994unspLdBPK_160300.1167 SVDANSPAEE0.994unspLdBPK_160300.1167 SVDANSPAEE0.994unspLdBPK_160300.1204 SARETSTHEG0.992unspLdBPK_160300.15 SMNGHSIEDI0.993unspLdBPK_160300.193 SNTADSTRND0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India