LdBPK_180360.1 | GPI-anchor transamidase subunit 8 (GPI8), putative

_IDPredictionOTHERSPmTPCS_Position
LdBPK_180360.1SP0.0013870.9984830.000130CS pos: 30-31. AYA-AV. Pr: 0.4884
No Results

  • Fasta :-

    >LdBPK_180360.1 MTFPTRCTATTLLVVVLVLTASSCLSDAYAAVMNAAAAAASAPLEATGKGQSNNWAVIVS SSRYLFNYRHTANALTMYHLLRQHGIDDDHILLFLSDSFACDPRNVYPAEIFSQPPGERD ANGHASMNLYGCSAQVDYAGSDVDVRRFLSVLQGRYDENTPPTRRLLSDDKSNIIIYVAG HGAKSFFKFQDTEFLSSSDISETLMMMHQQRRYGRIVFLADTCHAIALCEHVEAPNVLCL AASDAESESYSFQYDEQLGTHMVSFWMNEMYSLLNGTSCSNPLTRRIGNDAVSVLHQSWY NFNYHPYRVEASRNRSKPAHRDAVNDPTALREWIVADFVCGRVPAAVPVDVRYDLE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_180360.1.fa Sequence name : LdBPK_180360 Sequence length : 356 VALUES OF COMPUTED PARAMETERS Coef20 : 5.090 CoefTot : 0.747 ChDiff : -11 ZoneTo : 86 KR : 5 DE : 2 CleavSite : 84 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.024 2.247 0.462 0.642 MesoH : 0.257 0.618 -0.146 0.273 MuHd_075 : 34.894 23.816 10.657 7.596 MuHd_095 : 25.799 17.661 7.924 4.962 MuHd_100 : 25.353 17.911 7.096 4.900 MuHd_105 : 26.988 20.024 8.590 6.458 Hmax_075 : 14.900 14.100 2.834 5.080 Hmax_095 : 13.825 14.875 2.063 4.883 Hmax_100 : 13.200 22.100 1.637 5.930 Hmax_105 : 9.363 11.800 1.321 3.946 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.6408 0.3592 DFMC : 0.2916 0.7084 This protein is probably imported in mitochondria. f(Ser) = 0.0930 f(Arg) = 0.0465 CMi = 0.68847 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 356 LdBPK_180360.1 MTFPTRCTATTLLVVVLVLTASSCLSDAYAAVMNAAAAAASAPLEATGKGQSNNWAVIVSSSRYLFNYRHTANALTMYHL 80 LRQHGIDDDHILLFLSDSFACDPRNVYPAEIFSQPPGERDANGHASMNLYGCSAQVDYAGSDVDVRRFLSVLQGRYDENT 160 PPTRRLLSDDKSNIIIYVAGHGAKSFFKFQDTEFLSSSDISETLMMMHQQRRYGRIVFLADTCHAIALCEHVEAPNVLCL 240 AASDAESESYSFQYDEQLGTHMVSFWMNEMYSLLNGTSCSNPLTRRIGNDAVSVLHQSWYNFNYHPYRVEASRNRSKPAH 320 RDAVNDPTALREWIVADFVCGRVPAAVPVDVRYDLE 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_180360.1 6 -MTFPTR|CT 0.085 . LdBPK_180360.1 49 PLEATGK|GQ 0.065 . LdBPK_180360.1 63 VIVSSSR|YL 0.100 . LdBPK_180360.1 69 RYLFNYR|HT 0.098 . LdBPK_180360.1 82 TMYHLLR|QH 0.114 . LdBPK_180360.1 104 SFACDPR|NV 0.163 . LdBPK_180360.1 119 SQPPGER|DA 0.122 . LdBPK_180360.1 146 GSDVDVR|RF 0.075 . LdBPK_180360.1 147 SDVDVRR|FL 0.216 . LdBPK_180360.1 155 LSVLQGR|YD 0.114 . LdBPK_180360.1 164 ENTPPTR|RL 0.069 . LdBPK_180360.1 165 NTPPTRR|LL 0.106 . LdBPK_180360.1 171 RLLSDDK|SN 0.071 . LdBPK_180360.1 184 VAGHGAK|SF 0.104 . LdBPK_180360.1 188 GAKSFFK|FQ 0.085 . LdBPK_180360.1 211 MMMHQQR|RY 0.128 . LdBPK_180360.1 212 MMHQQRR|YG 0.196 . LdBPK_180360.1 215 QQRRYGR|IV 0.404 . LdBPK_180360.1 285 CSNPLTR|RI 0.117 . LdBPK_180360.1 286 SNPLTRR|IG 0.117 . LdBPK_180360.1 308 FNYHPYR|VE 0.076 . LdBPK_180360.1 313 YRVEASR|NR 0.087 . LdBPK_180360.1 315 VEASRNR|SK 0.128 . LdBPK_180360.1 317 ASRNRSK|PA 0.070 . LdBPK_180360.1 321 RSKPAHR|DA 0.119 . LdBPK_180360.1 331 NDPTALR|EW 0.075 . LdBPK_180360.1 342 ADFVCGR|VP 0.079 . LdBPK_180360.1 352 AVPVDVR|YD 0.075 . ____________________________^_________________

  • Fasta :-

    >LdBPK_180360.1 ATGACGTTTCCAACACGGTGTACCGCGACGACGTTGTTGGTCGTTGTTCTTGTTCTCACC GCCTCGTCCTGTTTGTCAGACGCGTATGCTGCGGTCATGAACGCCGCCGCGGCCGCCGCG TCTGCGCCGCTGGAGGCGACAGGCAAGGGCCAGAGCAACAACTGGGCTGTCATCGTCTCT TCCTCGCGGTACCTCTTCAACTACCGCCACACCGCCAATGCGCTTACCATGTACCACCTC TTGCGTCAACACGGCATCGACGACGACCATATTCTTCTCTTTTTGAGTGACAGCTTCGCC TGCGATCCACGAAATGTGTACCCTGCGGAGATCTTTTCGCAGCCCCCAGGAGAGCGCGAC GCGAATGGGCACGCGAGCATGAATCTGTACGGCTGCAGCGCGCAAGTGGACTACGCGGGC AGCGACGTGGACGTGCGCCGCTTTCTAAGTGTGTTGCAGGGCCGCTATGACGAGAACACG CCGCCCACGCGGCGGCTCCTTTCGGACGACAAGTCGAACATCATCATCTACGTCGCGGGG CACGGCGCGAAGTCGTTCTTCAAGTTTCAGGACACGGAGTTTCTGAGCTCATCGGACATT TCGGAGACGCTGATGATGATGCACCAGCAGCGGCGGTACGGTCGCATTGTTTTCTTGGCT GATACATGCCATGCGATTGCGCTGTGCGAGCATGTGGAGGCGCCGAACGTTTTATGTCTC GCCGCCTCGGATGCCGAGTCGGAGAGCTACTCGTTCCAGTACGACGAACAGCTTGGTACG CATATGGTTTCCTTTTGGATGAATGAGATGTACTCGTTGCTGAACGGCACGAGCTGCAGC AACCCGCTCACTCGCCGCATCGGCAACGATGCAGTGTCGGTGCTGCATCAATCGTGGTAC AACTTCAATTATCACCCCTACCGAGTGGAGGCGAGTCGAAACCGCTCGAAGCCAGCGCAC CGCGACGCCGTGAACGACCCGACTGCTCTGAGAGAGTGGATTGTAGCCGACTTTGTGTGC GGCCGGGTGCCGGCAGCGGTGCCAGTGGACGTTCGCTACGACCTCGAGTAG
  • Download Fasta

  • Fasta :-

    MTFPTRCTATTLLVVVLVLTASSCLSDAYAAVMNAAAAAASAPLEATGKGQSNNWAVIVS SSRYLFNYRHTANALTMYHLLRQHGIDDDHILLFLSDSFACDPRNVYPAEIFSQPPGERD ANGHASMNLYGCSAQVDYAGSDVDVRRFLSVLQGRYDENTPPTRRLLSDDKSNIIIYVAG HGAKSFFKFQDTEFLSSSDISETLMMMHQQRRYGRIVFLADTCHAIALCEHVEAPNVLCL AASDAESESYSFQYDEQLGTHMVSFWMNEMYSLLNGTSCSNPLTRRIGNDAVSVLHQSWY NFNYHPYRVEASRNRSKPAHRDAVNDPTALREWIVADFVCGRVPAAVPVDVRYDLE

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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India