LdBPK_180450.1 | serine carboxypeptidase (CBP1), putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0004185      

  • Computed_GO_Functions:  serine-type carboxypeptidase activity      

  • Computed_GO_Process_IDs:  GO:0006508      

  • Computed_GO_Processes:  proteolysis      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LdBPK_180450.1SP0.0060010.9936710.000328CS pos: 29-30. VYA-ST. Pr: 0.4709
No Results

  • Fasta :-

    >LdBPK_180450.1 MASSLSTTALLVALFVTMVPWACVRTVYASTPHHGYASCDPSVVQSSGYINIPGVNQTLK HYFYWLFGPRKWPNDFREPPVIMWMTGGPGCSSSMALLTELGPCMMNETSGELYHNTYGW NDEAYLLFVDQPTGVGYSYGDKSNYAHNQSEVAEDMYNFLQLFARRFTSPSITGANDFYI IGESYGGHYVPAVSHRILMGNERSDGLHINLKGIAIGNGLTDPYTQLPFHAQTAYYWCKE KLGAPCITEKAYEEMLSLLPACLEKTKKCNEGPDDSDVSCSVATALWAEYVDHYYATGRN SYDIRKQCIGDLCYPMQNTIDFYHKPTVRASLGASAKAQWSTCNGEVSALFERDYMRNFN FTFPHMLDMGIRVLIYAGDMDFICNWLGNEAWVKALQWFGTDGFNTAPNVEFAVSGRWAG QERSYGGLSFVRIYDAGHMVPMDQPEVALFMVHRFLHDRRLA
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_180450.1.fa Sequence name : LdBPK_180450 Sequence length : 462 VALUES OF COMPUTED PARAMETERS Coef20 : 4.974 CoefTot : -2.452 ChDiff : -13 ZoneTo : 74 KR : 4 DE : 1 CleavSite : 72 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.165 2.171 0.378 0.736 MesoH : 0.176 0.296 -0.235 0.275 MuHd_075 : 36.029 16.085 11.343 7.424 MuHd_095 : 28.060 27.484 9.173 5.599 MuHd_100 : 26.049 24.960 8.181 5.486 MuHd_105 : 31.629 21.236 9.088 6.883 Hmax_075 : 14.100 9.217 2.000 4.860 Hmax_095 : 9.888 20.600 4.048 7.360 Hmax_100 : 10.400 18.400 0.172 6.320 Hmax_105 : 9.700 16.450 0.449 4.100 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.5219 0.4781 DFMC : 0.5960 0.4040
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 462 LdBPK_180450.1 MASSLSTTALLVALFVTMVPWACVRTVYASTPHHGYASCDPSVVQSSGYINIPGVNQTLKHYFYWLFGPRKWPNDFREPP 80 VIMWMTGGPGCSSSMALLTELGPCMMNETSGELYHNTYGWNDEAYLLFVDQPTGVGYSYGDKSNYAHNQSEVAEDMYNFL 160 QLFARRFTSPSITGANDFYIIGESYGGHYVPAVSHRILMGNERSDGLHINLKGIAIGNGLTDPYTQLPFHAQTAYYWCKE 240 KLGAPCITEKAYEEMLSLLPACLEKTKKCNEGPDDSDVSCSVATALWAEYVDHYYATGRNSYDIRKQCIGDLCYPMQNTI 320 DFYHKPTVRASLGASAKAQWSTCNGEVSALFERDYMRNFNFTFPHMLDMGIRVLIYAGDMDFICNWLGNEAWVKALQWFG 400 TDGFNTAPNVEFAVSGRWAGQERSYGGLSFVRIYDAGHMVPMDQPEVALFMVHRFLHDRRLA 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 .............................................................. 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_180450.1 25 VPWACVR|TV 0.129 . LdBPK_180450.1 60 GVNQTLK|HY 0.075 . LdBPK_180450.1 70 YWLFGPR|KW 0.069 . LdBPK_180450.1 71 WLFGPRK|WP 0.077 . LdBPK_180450.1 77 KWPNDFR|EP 0.086 . LdBPK_180450.1 142 GYSYGDK|SN 0.084 . LdBPK_180450.1 165 FLQLFAR|RF 0.077 . LdBPK_180450.1 166 LQLFARR|FT 0.204 . LdBPK_180450.1 196 VPAVSHR|IL 0.179 . LdBPK_180450.1 203 ILMGNER|SD 0.123 . LdBPK_180450.1 212 GLHINLK|GI 0.074 . LdBPK_180450.1 239 TAYYWCK|EK 0.067 . LdBPK_180450.1 241 YYWCKEK|LG 0.060 . LdBPK_180450.1 250 APCITEK|AY 0.074 . LdBPK_180450.1 265 LPACLEK|TK 0.061 . LdBPK_180450.1 267 ACLEKTK|KC 0.064 . LdBPK_180450.1 268 CLEKTKK|CN 0.099 . LdBPK_180450.1 299 HYYATGR|NS 0.107 . LdBPK_180450.1 305 RNSYDIR|KQ 0.107 . LdBPK_180450.1 306 NSYDIRK|QC 0.079 . LdBPK_180450.1 325 TIDFYHK|PT 0.065 . LdBPK_180450.1 329 YHKPTVR|AS 0.072 . LdBPK_180450.1 337 SLGASAK|AQ 0.068 . LdBPK_180450.1 353 VSALFER|DY 0.110 . LdBPK_180450.1 357 FERDYMR|NF 0.095 . LdBPK_180450.1 372 MLDMGIR|VL 0.093 . LdBPK_180450.1 394 GNEAWVK|AL 0.070 . LdBPK_180450.1 417 EFAVSGR|WA 0.212 . LdBPK_180450.1 423 RWAGQER|SY 0.172 . LdBPK_180450.1 432 GGLSFVR|IY 0.093 . LdBPK_180450.1 454 ALFMVHR|FL 0.125 . LdBPK_180450.1 459 HRFLHDR|RL 0.093 . LdBPK_180450.1 460 RFLHDRR|LA 0.138 . ____________________________^_________________

  • Fasta :-

    >LdBPK_180450.1 ATGGCGTCTTCTCTCTCGACCACAGCGCTGCTAGTGGCGCTCTTCGTCACGATGGTGCCA TGGGCGTGCGTGCGCACCGTGTACGCGAGCACGCCACACCACGGGTACGCGAGCTGCGAC CCATCGGTGGTGCAGTCGAGCGGCTATATCAACATTCCCGGCGTCAACCAGACACTGAAG CACTACTTCTACTGGCTGTTCGGCCCGCGTAAGTGGCCAAATGATTTCCGCGAGCCGCCG GTGATTATGTGGATGACGGGCGGCCCGGGGTGCAGCTCCAGCATGGCCCTGCTCACGGAG CTCGGCCCCTGTATGATGAACGAGACGTCTGGTGAGCTCTACCACAATACTTACGGGTGG AATGACGAGGCGTACCTGCTGTTCGTGGACCAGCCGACCGGTGTGGGCTACTCGTACGGC GATAAGTCCAACTATGCGCACAATCAGAGCGAGGTTGCGGAGGACATGTACAACTTCCTG CAGCTGTTTGCGCGGCGCTTTACGTCGCCGTCGATCACGGGCGCGAACGACTTCTACATC ATTGGTGAGAGCTATGGCGGGCACTATGTTCCTGCCGTGAGCCACCGTATCCTCATGGGC AACGAGCGCAGTGACGGCCTGCACATCAATCTTAAGGGCATCGCCATCGGCAACGGCCTC ACGGACCCGTACACGCAGCTCCCCTTCCACGCCCAAACCGCTTACTACTGGTGCAAGGAG AAGCTGGGTGCTCCCTGCATTACCGAGAAGGCGTACGAGGAGATGCTCTCGCTGCTGCCA GCTTGCTTGGAGAAGACGAAGAAGTGCAACGAGGGGCCCGACGACTCGGACGTGTCGTGC AGCGTGGCCACCGCGCTCTGGGCCGAGTACGTGGATCATTACTATGCAACCGGCCGCAAC AGCTATGATATCCGCAAGCAGTGCATCGGCGACTTGTGCTACCCGATGCAGAATACGATC GACTTTTACCATAAGCCAACCGTCCGAGCATCGCTGGGTGCCAGCGCTAAGGCGCAGTGG TCCACGTGTAACGGTGAGGTCAGCGCGCTCTTCGAGAGGGACTACATGCGCAACTTTAAC TTTACCTTCCCACACATGTTGGATATGGGCATTCGTGTGTTGATCTACGCCGGTGATATG GACTTCATATGTAACTGGCTGGGCAACGAGGCGTGGGTCAAGGCACTGCAGTGGTTTGGT ACGGACGGCTTCAATACTGCGCCAAATGTGGAGTTCGCTGTCAGCGGTCGTTGGGCTGGT CAGGAGCGCAGTTACGGAGGCCTCAGTTTTGTGCGCATCTACGATGCTGGTCACATGGTA CCGATGGATCAGCCAGAGGTCGCGTTGTTCATGGTGCACCGCTTCCTGCACGACCGGCGT TTGGCATAA
  • Download Fasta

  • Fasta :-

    MASSLSTTALLVALFVTMVPWACVRTVYASTPHHGYASCDPSVVQSSGYINIPGVNQTLK HYFYWLFGPRKWPNDFREPPVIMWMTGGPGCSSSMALLTELGPCMMNETSGELYHNTYGW NDEAYLLFVDQPTGVGYSYGDKSNYAHNQSEVAEDMYNFLQLFARRFTSPSITGANDFYI IGESYGGHYVPAVSHRILMGNERSDGLHINLKGIAIGNGLTDPYTQLPFHAQTAYYWCKE KLGAPCITEKAYEEMLSLLPACLEKTKKCNEGPDDSDVSCSVATALWAEYVDHYYATGRN SYDIRKQCIGDLCYPMQNTIDFYHKPTVRASLGASAKAQWSTCNGEVSALFERDYMRNFN FTFPHMLDMGIRVLIYAGDMDFICNWLGNEAWVKALQWFGTDGFNTAPNVEFAVSGRWAG QERSYGGLSFVRIYDAGHMVPMDQPEVALFMVHRFLHDRRLA

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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India