LdBPK_190120.1 | Der1-like family, putative

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_IDPredictionOTHERSPmTPCS_Position
LdBPK_190120.1OTHER0.9995540.0001200.000325
No Results

  • Fasta :-

    >LdBPK_190120.1 MSQNFGDWFNQLGLVTRASLVASVGLSAACSLNMVGVGSVILTSEAITSLQVWRFVTAAF YLGNFSFPWLMTVAMFVTYVKNNEESDFKGKTADMTYMFLLLVGALSSAGLFFNVYVTSF SFLMALCWIFCKRHPEQELTLFGFSFRSAVFPWVLMALHLVMGQGLLADILGIVAGHAYV FFKDVFPVSHNQRWLETPMWLRRQFTQPTHRVASFGPEMHPYDPRFQAAWRGEAQQRSSG LHNWGRGQTLGSS
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_190120.1.fa Sequence name : LdBPK_190120 Sequence length : 253 VALUES OF COMPUTED PARAMETERS Coef20 : 4.027 CoefTot : -0.416 ChDiff : 3 ZoneTo : 83 KR : 3 DE : 2 CleavSite : 56 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.212 1.971 0.434 0.761 MesoH : 1.047 1.217 0.031 0.492 MuHd_075 : 25.998 21.092 6.347 6.583 MuHd_095 : 23.935 16.168 5.780 4.936 MuHd_100 : 36.425 19.189 8.406 7.065 MuHd_105 : 42.471 24.006 10.116 8.566 Hmax_075 : 11.400 19.500 2.089 5.565 Hmax_095 : 11.900 17.238 -0.572 5.355 Hmax_100 : 19.300 15.600 2.337 6.000 Hmax_105 : 18.700 14.117 2.329 5.870 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7254 0.2746 DFMC : 0.3830 0.6170 This protein is probably imported in chloroplast. f(Ser) = 0.1084 f(Arg) = 0.0241 CMi = 1.04530 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 253 LdBPK_190120.1 MSQNFGDWFNQLGLVTRASLVASVGLSAACSLNMVGVGSVILTSEAITSLQVWRFVTAAFYLGNFSFPWLMTVAMFVTYV 80 KNNEESDFKGKTADMTYMFLLLVGALSSAGLFFNVYVTSFSFLMALCWIFCKRHPEQELTLFGFSFRSAVFPWVLMALHL 160 VMGQGLLADILGIVAGHAYVFFKDVFPVSHNQRWLETPMWLRRQFTQPTHRVASFGPEMHPYDPRFQAAWRGEAQQRSSG 240 LHNWGRGQTLGSS 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ............. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_190120.1 17 QLGLVTR|AS 0.085 . LdBPK_190120.1 54 TSLQVWR|FV 0.189 . LdBPK_190120.1 81 MFVTYVK|NN 0.059 . LdBPK_190120.1 89 NEESDFK|GK 0.064 . LdBPK_190120.1 91 ESDFKGK|TA 0.075 . LdBPK_190120.1 132 LCWIFCK|RH 0.061 . LdBPK_190120.1 133 CWIFCKR|HP 0.238 . LdBPK_190120.1 147 LFGFSFR|SA 0.115 . LdBPK_190120.1 183 HAYVFFK|DV 0.139 . LdBPK_190120.1 193 PVSHNQR|WL 0.114 . LdBPK_190120.1 202 ETPMWLR|RQ 0.073 . LdBPK_190120.1 203 TPMWLRR|QF 0.181 . LdBPK_190120.1 211 FTQPTHR|VA 0.116 . LdBPK_190120.1 225 MHPYDPR|FQ 0.095 . LdBPK_190120.1 231 RFQAAWR|GE 0.105 . LdBPK_190120.1 237 RGEAQQR|SS 0.148 . LdBPK_190120.1 246 GLHNWGR|GQ 0.099 . ____________________________^_________________

  • Fasta :-

    >LdBPK_190120.1 ATGTCGCAGAACTTTGGCGACTGGTTCAATCAGCTGGGCCTTGTCACCCGTGCTTCTCTC GTCGCGTCTGTGGGCCTGTCCGCCGCCTGCTCCCTCAACATGGTGGGTGTCGGCTCGGTT ATCCTCACCTCCGAAGCCATCACCTCGCTGCAGGTGTGGCGCTTCGTAACAGCTGCCTTC TACCTCGGCAATTTCTCTTTCCCGTGGCTCATGACGGTTGCCATGTTTGTCACGTACGTC AAGAACAACGAGGAGAGCGACTTCAAAGGCAAGACGGCAGACATGACGTACATGTTTCTG CTGCTGGTGGGCGCCCTCTCCTCTGCCGGCCTATTTTTTAACGTGTACGTGACGAGTTTC TCGTTCCTAATGGCGCTGTGCTGGATTTTTTGCAAGCGACACCCCGAGCAGGAGCTGACG CTCTTTGGATTCTCCTTCCGCTCGGCTGTGTTTCCGTGGGTGTTGATGGCACTGCACCTC GTCATGGGGCAGGGGCTGCTTGCTGATATTCTTGGCATAGTGGCCGGACACGCCTACGTA TTCTTCAAGGATGTTTTTCCAGTCTCACACAATCAGCGGTGGCTGGAGACTCCGATGTGG CTGCGGCGCCAGTTCACGCAGCCGACGCACCGCGTCGCCTCCTTTGGCCCTGAGATGCAC CCGTACGACCCTCGCTTTCAGGCGGCATGGCGGGGCGAAGCTCAGCAGAGGAGCAGCGGC TTGCACAACTGGGGACGCGGCCAGACGCTCGGTAGCAGCTGA
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  • Fasta :-

    MSQNFGDWFNQLGLVTRASLVASVGLSAACSLNMVGVGSVILTSEAITSLQVWRFVTAAF YLGNFSFPWLMTVAMFVTYVKNNEESDFKGKTADMTYMFLLLVGALSSAGLFFNVYVTSF SFLMALCWIFCKRHPEQELTLFGFSFRSAVFPWVLMALHLVMGQGLLADILGIVAGHAYV FFKDVFPVSHNQRWLETPMWLRRQFTQPTHRVASFGPEMHPYDPRFQAAWRGEAQQRSSG LHNWGRGQTLGSS

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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India