LdBPK_201220.1 | calpain-like cysteine peptidase, putative (fragment)

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_IDPredictionOTHERSPmTPCS_Position
LdBPK_201220.1OTHER0.9998480.0000630.000090
No Results

  • Fasta :-

    >LdBPK_201220.1 MSHNGTAGEWRELGEEQPTLSSKPQDAAMNTYATKEAYEGERAEHLAQKSHSPQYYLADS EPQVIPQQAYEEEAPQEYPKEIGNNYDAPQHAYEVVAPDNAHARSMPAPHAAAA
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_201220.1.fa Sequence name : LdBPK_201220 Sequence length : 114 VALUES OF COMPUTED PARAMETERS Coef20 : 2.880 CoefTot : -0.620 ChDiff : -12 ZoneTo : 8 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : -0.718 -0.247 -0.548 0.132 MesoH : -1.979 -0.997 -0.866 -0.063 MuHd_075 : 12.550 3.243 2.965 3.368 MuHd_095 : 25.339 8.214 5.000 3.724 MuHd_100 : 18.923 5.748 2.943 2.620 MuHd_105 : 15.285 5.172 1.763 2.060 Hmax_075 : 0.350 -4.667 -3.435 1.890 Hmax_095 : 0.175 -3.588 -3.841 1.059 Hmax_100 : 1.400 -3.100 -3.911 1.710 Hmax_105 : 1.400 -2.800 -3.911 2.053 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9503 0.0497 DFMC : 0.9500 0.0500
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 114 LdBPK_201220.1 MSHNGTAGEWRELGEEQPTLSSKPQDAAMNTYATKEAYEGERAEHLAQKSHSPQYYLADSEPQVIPQQAYEEEAPQEYPK 80 EIGNNYDAPQHAYEVVAPDNAHARSMPAPHAAAA 160 ................................................................................ 80 .................................. 160 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_201220.1 11 GTAGEWR|EL 0.169 . LdBPK_201220.1 23 QPTLSSK|PQ 0.079 . LdBPK_201220.1 35 MNTYATK|EA 0.084 . LdBPK_201220.1 42 EAYEGER|AE 0.084 . LdBPK_201220.1 49 AEHLAQK|SH 0.090 . LdBPK_201220.1 80 APQEYPK|EI 0.084 . LdBPK_201220.1 104 PDNAHAR|SM 0.155 . ____________________________^_________________

  • Fasta :-

    >LdBPK_201220.1 ATGTCGCACAACGGTACAGCAGGTGAGTGGCGAGAGCTCGGTGAAGAGCAGCCAACGCTA TCCTCCAAGCCACAAGACGCAGCCATGAACACTTATGCCACCAAGGAGGCTTACGAGGGA GAGCGTGCCGAGCACTTAGCTCAGAAGTCTCACTCTCCTCAATATTACTTGGCGGACAGC GAGCCCCAAGTAATCCCGCAGCAGGCCTACGAGGAGGAGGCTCCCCAGGAGTATCCGAAA GAGATCGGCAATAACTATGACGCACCGCAGCACGCGTACGAGGTGGTGGCCCCGGACAAC GCTCACGCCCGCTCGATGCCTGCGCCGCACGCTGCCGCTGCC
  • Download Fasta

  • Fasta :-

    MSHNGTAGEWRELGEEQPTLSSKPQDAAMNTYATKEAYEGERAEHLAQKSHSPQYYLADS EPQVIPQQAYEEEAPQEYPKEIGNNYDAPQHAYEVVAPDNAHARSMPAPHAAAA

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IDSitePeptideScoreMethod
LdBPK_201220.121 SQPTLSSKPQ0.991unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India