LdBPK_201720.1 | amidohydrolase, putative (fragment)

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0097014      GO:0005737      GO:0005654      

  • Curated_GO_Components:  ciliary plasm      cytoplasm      nucleoplasm      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LdBPK_201720.1OTHER0.9850840.0113590.003557
No Results

  • Fasta :-

    >LdBPK_201720.1 MSFVQTLITAVQPEVVQWRRHIHEYPYVAYEEQPTADYVADVLSSMPAPLDIRRLTPNSV VADLRGGAGEGPMYALRADMDALPLQEESGEPFSSKRPGVMHAC
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_201720.1.fa Sequence name : LdBPK_201720 Sequence length : 104 VALUES OF COMPUTED PARAMETERS Coef20 : 4.508 CoefTot : -0.188 ChDiff : -6 ZoneTo : 13 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.429 0.812 -0.179 0.358 MesoH : -1.254 -0.135 -0.521 0.084 MuHd_075 : 9.185 8.938 3.084 1.165 MuHd_095 : 15.578 25.176 6.289 6.283 MuHd_100 : 11.113 19.841 3.692 5.466 MuHd_105 : 3.524 11.981 0.447 3.630 Hmax_075 : 8.517 9.217 -0.061 3.840 Hmax_095 : 19.300 22.800 3.309 7.810 Hmax_100 : 19.000 21.900 3.018 7.250 Hmax_105 : 10.700 16.100 0.679 5.696 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9130 0.0870 DFMC : 0.9406 0.0594
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 104 LdBPK_201720.1 MSFVQTLITAVQPEVVQWRRHIHEYPYVAYEEQPTADYVADVLSSMPAPLDIRRLTPNSVVADLRGGAGEGPMYALRADM 80 DALPLQEESGEPFSSKRPGVMHAC 160 ................................................................................ 80 ........................ 160 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_201720.1 19 PEVVQWR|RH 0.088 . LdBPK_201720.1 20 EVVQWRR|HI 0.146 . LdBPK_201720.1 53 PAPLDIR|RL 0.065 . LdBPK_201720.1 54 APLDIRR|LT 0.104 . LdBPK_201720.1 65 SVVADLR|GG 0.098 . LdBPK_201720.1 77 GPMYALR|AD 0.116 . LdBPK_201720.1 96 GEPFSSK|RP 0.067 . LdBPK_201720.1 97 EPFSSKR|PG 0.129 . ____________________________^_________________

  • Fasta :-

    >LdBPK_201720.1 ATGTCATTTGTGCAGACACTAATCACAGCTGTGCAGCCTGAGGTGGTGCAGTGGCGGCGC CACATCCACGAGTATCCATATGTTGCGTATGAGGAGCAGCCCACCGCCGACTACGTGGCG GACGTCCTCAGCAGCATGCCCGCACCGCTGGACATTCGCCGGCTGACGCCGAACAGCGTC GTGGCGGACCTGCGGGGTGGCGCTGGCGAGGGACCCATGTACGCCCTGCGCGCCGACATG GATGCACTGCCGCTGCAGGAGGAGAGCGGCGAGCCCTTCAGCTCGAAGCGGCCAGGCGTG ATGCACGCGTGT
  • Download Fasta

  • Fasta :-

    MSFVQTLITAVQPEVVQWRRHIHEYPYVAYEEQPTADYVADVLSSMPAPLDIRRLTPNSV VADLRGGAGEGPMYALRADMDALPLQEESGEPFSSKRPGVMHAC

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_201720.156 TIRRLTPNSV0.99unspLdBPK_201720.194 SGEPFSSKRP0.992unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India