LdBPK_212070.1 | proteasome alpha 2 subunit, putative

_IDPredictionOTHERSPmTPCS_Position
LdBPK_212070.1OTHER0.9980050.0012870.000708
No Results

  • Fasta :-

    >LdBPK_212070.1 MSEAFYGLTTFSPSGKLVQIEYATTAAGKGTTALGVKATDGVVIAAKKKAPSTLVDASSI QKVFVLDEHVGCTYSGMGPDCRVLIDSARKNCQQYRLMYNESIPISQLVRKISALYQEFT QSGGVRPFGCSLLVAGVDANGYHLYQVDPSGTFWAWKATAIGTGSPDAKAFLEKRYTVDM ELEDAVHTALLTLKEGFDGQMTSENTEVGRVVGNRFEVLSVDQLRDYLDQI
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_212070.1.fa Sequence name : LdBPK_212070 Sequence length : 231 VALUES OF COMPUTED PARAMETERS Coef20 : 3.816 CoefTot : -1.652 ChDiff : -4 ZoneTo : 55 KR : 6 DE : 3 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.835 1.024 0.076 0.451 MesoH : -0.282 0.310 -0.312 0.218 MuHd_075 : 17.725 11.660 5.145 3.817 MuHd_095 : 28.989 18.451 8.276 5.498 MuHd_100 : 29.769 14.340 8.135 4.434 MuHd_105 : 27.668 22.488 7.900 6.373 Hmax_075 : 10.300 11.550 1.606 4.156 Hmax_095 : 12.775 14.175 2.365 4.428 Hmax_100 : 12.800 13.700 2.424 4.350 Hmax_105 : 13.767 13.300 3.063 4.960 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9647 0.0353 DFMC : 0.9608 0.0392
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 231 LdBPK_212070.1 MSEAFYGLTTFSPSGKLVQIEYATTAAGKGTTALGVKATDGVVIAAKKKAPSTLVDASSIQKVFVLDEHVGCTYSGMGPD 80 CRVLIDSARKNCQQYRLMYNESIPISQLVRKISALYQEFTQSGGVRPFGCSLLVAGVDANGYHLYQVDPSGTFWAWKATA 160 IGTGSPDAKAFLEKRYTVDMELEDAVHTALLTLKEGFDGQMTSENTEVGRVVGNRFEVLSVDQLRDYLDQI 240 ................................................................................ 80 ................................................................................ 160 ....................................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_212070.1 16 TFSPSGK|LV 0.097 . LdBPK_212070.1 29 ATTAAGK|GT 0.067 . LdBPK_212070.1 37 TTALGVK|AT 0.071 . LdBPK_212070.1 47 GVVIAAK|KK 0.060 . LdBPK_212070.1 48 VVIAAKK|KA 0.082 . LdBPK_212070.1 49 VIAAKKK|AP 0.115 . LdBPK_212070.1 62 DASSIQK|VF 0.057 . LdBPK_212070.1 82 GMGPDCR|VL 0.085 . LdBPK_212070.1 89 VLIDSAR|KN 0.116 . LdBPK_212070.1 90 LIDSARK|NC 0.074 . LdBPK_212070.1 96 KNCQQYR|LM 0.080 . LdBPK_212070.1 110 PISQLVR|KI 0.109 . LdBPK_212070.1 111 ISQLVRK|IS 0.084 . LdBPK_212070.1 126 TQSGGVR|PF 0.141 . LdBPK_212070.1 157 GTFWAWK|AT 0.078 . LdBPK_212070.1 169 TGSPDAK|AF 0.087 . LdBPK_212070.1 174 AKAFLEK|RY 0.064 . LdBPK_212070.1 175 KAFLEKR|YT 0.210 . LdBPK_212070.1 194 TALLTLK|EG 0.071 . LdBPK_212070.1 210 ENTEVGR|VV 0.123 . LdBPK_212070.1 215 GRVVGNR|FE 0.107 . LdBPK_212070.1 225 LSVDQLR|DY 0.122 . ____________________________^_________________

  • Fasta :-

    >LdBPK_212070.1 ATGTCTGAGGCATTTTATGGTCTGACGACGTTTAGCCCTTCAGGAAAGCTGGTCCAGATT GAGTATGCGACGACAGCTGCCGGCAAAGGGACGACTGCGCTGGGGGTGAAGGCCACCGAT GGGGTCGTCATTGCTGCAAAGAAGAAGGCTCCATCTACCCTAGTGGATGCCTCATCGATC CAGAAGGTCTTCGTCTTGGATGAGCACGTTGGCTGCACCTACAGCGGCATGGGCCCGGAC TGCCGTGTTCTTATCGACTCAGCTCGGAAGAATTGCCAGCAGTACAGGCTGATGTACAAC GAGAGCATTCCGATCAGCCAGCTGGTGCGGAAGATTAGCGCTCTCTATCAGGAATTTACA CAGTCTGGCGGTGTTCGTCCCTTCGGATGCTCTCTCCTGGTCGCTGGGGTGGACGCTAAC GGCTACCATTTGTATCAGGTGGACCCTAGCGGCACGTTCTGGGCGTGGAAGGCGACGGCG ATTGGCACCGGAAGTCCGGACGCGAAGGCATTTCTAGAAAAGCGTTACACTGTGGACATG GAGCTGGAGGATGCTGTACACACCGCATTGTTGACGCTAAAGGAGGGCTTTGATGGCCAG ATGACGTCAGAAAACACTGAGGTCGGTCGTGTTGTAGGAAACCGTTTCGAAGTCCTGAGC GTCGATCAGCTGCGCGATTACCTGGACCAGATTTAG
  • Download Fasta

  • Fasta :-

    MSEAFYGLTTFSPSGKLVQIEYATTAAGKGTTALGVKATDGVVIAAKKKAPSTLVDASSI QKVFVLDEHVGCTYSGMGPDCRVLIDSARKNCQQYRLMYNESIPISQLVRKISALYQEFT QSGGVRPFGCSLLVAGVDANGYHLYQVDPSGTFWAWKATAIGTGSPDAKAFLEKRYTVDM ELEDAVHTALLTLKEGFDGQMTSENTEVGRVVGNRFEVLSVDQLRDYLDQI

  • title: active site
  • coordinates: T31,K47,K49,K62,T163
No Results
No Results
No Results

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India