LdBPK_212200.1 | proteasome subunit alpha type-5, putative

_IDPredictionOTHERSPmTPCS_Position
LdBPK_212200.1OTHER0.9998660.0000780.000056
No Results

  • Fasta :-

    >LdBPK_212200.1 MFTSKSEYDRGVNTFSPEGRIFQIEYAVEAIKLGSTSLGIRTPEGVVLAAEKRVPSTLVV PSSMSKIMEIDSHIATVMSGMVADARILVEHARVESQNHRFTYNEPMSVESCTLATCDLS IQFGESGGKRKLMSRPFGVSLLIAGVDEKGPQLWQTDPSGTHTRYDAQAIGGGAEAAQSV FTERYHRNMTLEEGETLAVDILKQVMEDQLSPENIEVAVVRADDGKLHMYTPTEIKAIMS RMPE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_212200.1.fa Sequence name : LdBPK_212200 Sequence length : 244 VALUES OF COMPUTED PARAMETERS Coef20 : 3.598 CoefTot : 0.111 ChDiff : -10 ZoneTo : 6 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.641 1.265 0.019 0.446 MesoH : -0.442 0.519 -0.319 0.221 MuHd_075 : 25.215 13.992 6.120 5.424 MuHd_095 : 21.259 12.127 5.893 4.467 MuHd_100 : 17.996 13.742 4.133 4.822 MuHd_105 : 14.435 14.041 2.842 5.116 Hmax_075 : 3.063 1.575 -1.476 2.135 Hmax_095 : 11.200 5.600 0.820 3.320 Hmax_100 : 2.400 2.900 -1.503 2.760 Hmax_105 : -5.300 3.000 -3.944 2.000 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8993 0.1007 DFMC : 0.8939 0.1061
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 244 LdBPK_212200.1 MFTSKSEYDRGVNTFSPEGRIFQIEYAVEAIKLGSTSLGIRTPEGVVLAAEKRVPSTLVVPSSMSKIMEIDSHIATVMSG 80 MVADARILVEHARVESQNHRFTYNEPMSVESCTLATCDLSIQFGESGGKRKLMSRPFGVSLLIAGVDEKGPQLWQTDPSG 160 THTRYDAQAIGGGAEAAQSVFTERYHRNMTLEEGETLAVDILKQVMEDQLSPENIEVAVVRADDGKLHMYTPTEIKAIMS 240 RMPE 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_212200.1 5 --MFTSK|SE 0.076 . LdBPK_212200.1 10 SKSEYDR|GV 0.163 . LdBPK_212200.1 20 TFSPEGR|IF 0.122 . LdBPK_212200.1 32 YAVEAIK|LG 0.063 . LdBPK_212200.1 41 STSLGIR|TP 0.093 . LdBPK_212200.1 52 VVLAAEK|RV 0.060 . LdBPK_212200.1 53 VLAAEKR|VP 0.134 . LdBPK_212200.1 66 VPSSMSK|IM 0.066 . LdBPK_212200.1 86 GMVADAR|IL 0.086 . LdBPK_212200.1 93 ILVEHAR|VE 0.101 . LdBPK_212200.1 100 VESQNHR|FT 0.128 . LdBPK_212200.1 129 FGESGGK|RK 0.053 . LdBPK_212200.1 130 GESGGKR|KL 0.190 . LdBPK_212200.1 131 ESGGKRK|LM 0.092 . LdBPK_212200.1 135 KRKLMSR|PF 0.118 . LdBPK_212200.1 149 IAGVDEK|GP 0.060 . LdBPK_212200.1 164 PSGTHTR|YD 0.147 . LdBPK_212200.1 184 QSVFTER|YH 0.091 . LdBPK_212200.1 187 FTERYHR|NM 0.167 . LdBPK_212200.1 203 LAVDILK|QV 0.077 . LdBPK_212200.1 221 IEVAVVR|AD 0.145 . LdBPK_212200.1 226 VRADDGK|LH 0.062 . LdBPK_212200.1 236 YTPTEIK|AI 0.060 . LdBPK_212200.1 241 IKAIMSR|MP 0.103 . ____________________________^_________________

  • Fasta :-

    >LdBPK_212200.1 ATGTTCACCTCCAAGTCTGAGTACGACCGCGGCGTGAACACCTTCAGCCCGGAGGGTCGC ATTTTCCAGATCGAGTATGCTGTGGAGGCCATCAAACTGGGTAGCACCAGCCTCGGAATC CGTACGCCCGAGGGCGTCGTTCTTGCCGCGGAGAAACGCGTGCCATCGACTTTGGTCGTT CCGTCCAGCATGAGTAAGATTATGGAGATCGACAGCCACATTGCGACTGTCATGAGCGGC ATGGTTGCAGATGCGCGCATCCTTGTCGAGCACGCCCGCGTGGAGTCGCAGAACCACCGC TTCACCTACAACGAGCCCATGTCCGTGGAGTCCTGCACGCTAGCGACGTGCGACCTGTCG ATCCAGTTTGGTGAGAGCGGTGGCAAGCGCAAGCTGATGTCACGCCCGTTCGGCGTGTCG CTGCTCATCGCCGGCGTAGATGAAAAGGGCCCGCAGCTGTGGCAGACAGACCCCAGCGGC ACGCACACGCGCTACGACGCCCAAGCCATTGGTGGCGGTGCCGAGGCGGCGCAGAGTGTC TTCACGGAGCGCTACCACCGCAACATGACGCTGGAGGAGGGCGAGACGCTCGCGGTGGAC ATTCTGAAGCAGGTGATGGAGGACCAGCTGTCGCCGGAGAACATAGAGGTGGCCGTAGTG CGGGCAGACGACGGCAAGCTGCACATGTACACACCCACAGAAATCAAAGCAATCATGAGT CGCATGCCGGAGTAA
  • Download Fasta

  • Fasta :-

    MFTSKSEYDRGVNTFSPEGRIFQIEYAVEAIKLGSTSLGIRTPEGVVLAAEKRVPSTLVV PSSMSKIMEIDSHIATVMSGMVADARILVEHARVESQNHRFTYNEPMSVESCTLATCDLS IQFGESGGKRKLMSRPFGVSLLIAGVDEKGPQLWQTDPSGTHTRYDAQAIGGGAEAAQSV FTERYHRNMTLEEGETLAVDILKQVMEDQLSPENIEVAVVRADDGKLHMYTPTEIKAIMS RMPE

  • title: active site
  • coordinates: S35,E51,R53,K66,G172
No Results
No Results
IDSitePeptideScoreMethod
LdBPK_212200.1211 SEDQLSPENI0.997unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India