LdBPK_220440.1 | proteasome regulatory ATPase subunit 1, putative

_IDPredictionOTHERSPmTPCS_Position
LdBPK_220440.1OTHER0.9999510.0000160.000034
No Results

  • Fasta :-

    >LdBPK_220440.1 MSNEKGACQTKNTVRVKEDDKEEKEIIPLDKDDIALLNLYGSGPYHASIKELEEFVKSHV EELNKMGGMKESEMGLAPAVQWDLNSDQKVLERENPLHVGRCERILNKGQDDARYVISIR EHAKYVVTIGERVAPEDIEESMRVGIVMGYSKIQIEIPLPPRIDRSVSMMQVEDKPDVTY ADVGGVKEQIERIREVVELPITHPEKYTQLGIDPPKGVLLYGPPGTGKTLLAKAVANRTD ATFIRVIGSELVQRYIGEGARMIREIFQLARTKKACIIFFDEVDAVGGSRGSGDGDDEIQ RTMLEMVNQMDGFDSRGNIKVIMATNRPDTLDPALTRPGRMDRKLEIGLPDLEGRTNILR IHSRSLSCEKDVRFELIARLCPNTTGADLRSVCTEAGMFAIRARRKTITEKDFLDSVNKV VKGQHKFSATAKYMVYN
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_220440.1.fa Sequence name : LdBPK_220440 Sequence length : 437 VALUES OF COMPUTED PARAMETERS Coef20 : 3.389 CoefTot : -0.857 ChDiff : -5 ZoneTo : 17 KR : 4 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.247 0.888 -0.116 0.455 MesoH : -1.084 0.240 -0.438 0.126 MuHd_075 : 9.886 5.839 1.810 1.257 MuHd_095 : 17.366 2.765 2.146 2.032 MuHd_100 : 23.020 3.159 4.090 2.909 MuHd_105 : 26.068 6.558 5.372 4.091 Hmax_075 : -11.550 -3.200 -4.297 -0.980 Hmax_095 : -11.287 -5.688 -5.670 -0.919 Hmax_100 : -6.000 -3.100 -4.002 -0.180 Hmax_105 : -2.300 -0.500 -3.206 -0.180 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9808 0.0192 DFMC : 0.9649 0.0351
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 437 LdBPK_220440.1 MSNEKGACQTKNTVRVKEDDKEEKEIIPLDKDDIALLNLYGSGPYHASIKELEEFVKSHVEELNKMGGMKESEMGLAPAV 80 QWDLNSDQKVLERENPLHVGRCERILNKGQDDARYVISIREHAKYVVTIGERVAPEDIEESMRVGIVMGYSKIQIEIPLP 160 PRIDRSVSMMQVEDKPDVTYADVGGVKEQIERIREVVELPITHPEKYTQLGIDPPKGVLLYGPPGTGKTLLAKAVANRTD 240 ATFIRVIGSELVQRYIGEGARMIREIFQLARTKKACIIFFDEVDAVGGSRGSGDGDDEIQRTMLEMVNQMDGFDSRGNIK 320 VIMATNRPDTLDPALTRPGRMDRKLEIGLPDLEGRTNILRIHSRSLSCEKDVRFELIARLCPNTTGADLRSVCTEAGMFA 400 IRARRKTITEKDFLDSVNKVVKGQHKFSATAKYMVYN 480 ................................................................................ 80 ................................................................................ 160 ....P........................................................................... 240 ................................................................................ 320 ................................................................................ 400 ..................................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LdBPK_220440.1 5 --MSNEK|GA 0.074 . LdBPK_220440.1 11 KGACQTK|NT 0.067 . LdBPK_220440.1 15 QTKNTVR|VK 0.085 . LdBPK_220440.1 17 KNTVRVK|ED 0.080 . LdBPK_220440.1 21 RVKEDDK|EE 0.056 . LdBPK_220440.1 24 EDDKEEK|EI 0.065 . LdBPK_220440.1 31 EIIPLDK|DD 0.072 . LdBPK_220440.1 50 PYHASIK|EL 0.072 . LdBPK_220440.1 57 ELEEFVK|SH 0.076 . LdBPK_220440.1 65 HVEELNK|MG 0.068 . LdBPK_220440.1 70 NKMGGMK|ES 0.075 . LdBPK_220440.1 89 DLNSDQK|VL 0.067 . LdBPK_220440.1 93 DQKVLER|EN 0.071 . LdBPK_220440.1 101 NPLHVGR|CE 0.086 . LdBPK_220440.1 104 HVGRCER|IL 0.343 . LdBPK_220440.1 108 CERILNK|GQ 0.071 . LdBPK_220440.1 114 KGQDDAR|YV 0.153 . LdBPK_220440.1 120 RYVISIR|EH 0.081 . LdBPK_220440.1 124 SIREHAK|YV 0.121 . LdBPK_220440.1 132 VVTIGER|VA 0.066 . LdBPK_220440.1 143 DIEESMR|VG 0.075 . LdBPK_220440.1 152 IVMGYSK|IQ 0.056 . LdBPK_220440.1 162 EIPLPPR|ID 0.073 . LdBPK_220440.1 165 LPPRIDR|SV 0.670 *ProP* LdBPK_220440.1 175 MMQVEDK|PD 0.065 . LdBPK_220440.1 187 ADVGGVK|EQ 0.056 . LdBPK_220440.1 192 VKEQIER|IR 0.081 . LdBPK_220440.1 194 EQIERIR|EV 0.111 . LdBPK_220440.1 206 PITHPEK|YT 0.069 . LdBPK_220440.1 216 LGIDPPK|GV 0.077 . LdBPK_220440.1 228 GPPGTGK|TL 0.061 . LdBPK_220440.1 233 GKTLLAK|AV 0.074 . LdBPK_220440.1 238 AKAVANR|TD 0.087 . LdBPK_220440.1 245 TDATFIR|VI 0.154 . LdBPK_220440.1 254 GSELVQR|YI 0.183 . LdBPK_220440.1 261 YIGEGAR|MI 0.098 . LdBPK_220440.1 264 EGARMIR|EI 0.291 . LdBPK_220440.1 271 EIFQLAR|TK 0.084 . LdBPK_220440.1 273 FQLARTK|KA 0.071 . LdBPK_220440.1 274 QLARTKK|AC 0.379 . LdBPK_220440.1 290 DAVGGSR|GS 0.113 . LdBPK_220440.1 301 GDDEIQR|TM 0.074 . LdBPK_220440.1 316 MDGFDSR|GN 0.123 . LdBPK_220440.1 320 DSRGNIK|VI 0.062 . LdBPK_220440.1 327 VIMATNR|PD 0.075 . LdBPK_220440.1 337 LDPALTR|PG 0.074 . LdBPK_220440.1 340 ALTRPGR|MD 0.259 . LdBPK_220440.1 343 RPGRMDR|KL 0.494 . LdBPK_220440.1 344 PGRMDRK|LE 0.070 . LdBPK_220440.1 355 LPDLEGR|TN 0.082 . LdBPK_220440.1 360 GRTNILR|IH 0.096 . LdBPK_220440.1 364 ILRIHSR|SL 0.185 . LdBPK_220440.1 370 RSLSCEK|DV 0.081 . LdBPK_220440.1 373 SCEKDVR|FE 0.082 . LdBPK_220440.1 379 RFELIAR|LC 0.065 . LdBPK_220440.1 390 TTGADLR|SV 0.284 . LdBPK_220440.1 402 AGMFAIR|AR 0.085 . LdBPK_220440.1 404 MFAIRAR|RK 0.116 . LdBPK_220440.1 405 FAIRARR|KT 0.390 . LdBPK_220440.1 406 AIRARRK|TI 0.091 . LdBPK_220440.1 411 RKTITEK|DF 0.071 . LdBPK_220440.1 419 FLDSVNK|VV 0.065 . LdBPK_220440.1 422 SVNKVVK|GQ 0.077 . LdBPK_220440.1 426 VVKGQHK|FS 0.072 . LdBPK_220440.1 432 KFSATAK|YM 0.076 . ____________________________^_________________

  • Fasta :-

    >LdBPK_220440.1 ATGTCAAACGAGAAGGGCGCGTGCCAGACCAAGAACACGGTCCGCGTGAAGGAGGACGAC AAGGAGGAGAAGGAGATCATCCCGCTAGACAAGGATGACATCGCGCTGCTGAACCTATAC GGCTCCGGCCCCTACCACGCAAGCATCAAGGAACTCGAGGAGTTTGTGAAGTCGCACGTG GAGGAGCTGAACAAGATGGGCGGCATGAAGGAAAGTGAGATGGGTCTCGCGCCTGCTGTG CAGTGGGACCTGAACAGTGACCAGAAGGTGCTAGAGCGCGAAAATCCACTGCACGTTGGC CGCTGCGAGCGCATCCTCAACAAGGGCCAAGACGATGCCCGATATGTGATCAGCATCCGC GAGCACGCCAAGTACGTTGTCACTATCGGCGAGCGTGTTGCACCAGAAGATATTGAGGAG TCCATGCGTGTTGGCATTGTCATGGGATACAGTAAGATCCAGATCGAGATCCCACTGCCG CCGCGCATCGACCGATCCGTGTCGATGATGCAGGTAGAGGACAAGCCCGACGTGACCTAC GCCGACGTCGGCGGTGTCAAGGAGCAGATTGAACGCATTCGTGAGGTGGTGGAGCTGCCC ATAACGCACCCGGAGAAGTACACGCAGCTTGGCATTGATCCCCCAAAGGGCGTGCTGCTC TATGGCCCTCCCGGCACCGGCAAGACGCTGCTGGCCAAGGCCGTGGCAAACCGCACGGAT GCCACGTTCATTCGTGTGATCGGCTCTGAGCTAGTGCAGCGGTACATTGGCGAAGGCGCG CGCATGATTCGGGAGATCTTCCAGCTGGCGCGCACAAAGAAGGCGTGCATTATCTTCTTC GACGAGGTCGACGCCGTCGGCGGCAGCCGCGGCAGCGGCGACGGCGATGACGAGATTCAG CGCACCATGCTGGAGATGGTGAATCAGATGGACGGCTTCGACTCACGCGGCAACATCAAG GTAATCATGGCGACGAACCGGCCCGACACGCTAGACCCCGCCCTGACCCGGCCGGGGCGC ATGGATCGCAAGCTGGAGATTGGCCTGCCGGACTTGGAGGGCCGCACGAACATCCTGCGC ATCCACTCGCGATCTCTTTCGTGCGAAAAGGATGTGCGGTTCGAGTTGATTGCCAGGCTG TGCCCAAACACCACCGGCGCTGATCTGCGGTCGGTTTGCACGGAGGCTGGCATGTTCGCC ATCCGCGCCCGCCGCAAGACAATCACCGAGAAGGATTTCTTAGACTCGGTGAACAAGGTA GTGAAAGGCCAGCACAAGTTCAGCGCCACTGCCAAGTACATGGTGTACAACTAA
  • Download Fasta

  • Fasta :-

    MSNEKGACQTKNTVRVKEDDKEEKEIIPLDKDDIALLNLYGSGPYHASIKELEEFVKSHV EELNKMGGMKESEMGLAPAVQWDLNSDQKVLERENPLHVGRCERILNKGQDDARYVISIR EHAKYVVTIGERVAPEDIEESMRVGIVMGYSKIQIEIPLPPRIDRSVSMMQVEDKPDVTY ADVGGVKEQIERIREVVELPITHPEKYTQLGIDPPKGVLLYGPPGTGKTLLAKAVANRTD ATFIRVIGSELVQRYIGEGARMIREIFQLARTKKACIIFFDEVDAVGGSRGSGDGDDEIQ RTMLEMVNQMDGFDSRGNIKVIMATNRPDTLDPALTRPGRMDRKLEIGLPDLEGRTNILR IHSRSLSCEKDVRFELIARLCPNTTGADLRSVCTEAGMFAIRARRKTITEKDFLDSVNKV VKGQHKFSATAKYMVYN

  • title: ATP binding site
  • coordinates: P223,P224,G225,T226,G227,K228,T229,L230,D281,N326
No Results
No Results
IDSitePeptideScoreMethod
LdBPK_220440.1292 SGSRGSGDGD0.991unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India